Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq625 105 1e-17 seq11786 86.0 1e-11 >seq625 Length=71657 Score = 105 bits (116), Expect = 1e-17 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 189417 AACAACTCGAA-AAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATG 189475 |||| |||||| ||||| |||||||||| ||||||| || | |||| ||| ||| Sbjct 54278 AACAGCTCGAAGAAAGCA-AAACTCATGACTTATTATGGAATGCTGCCCAAAAGCAAATG 54220 Query 189476 GTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAA 189535 ||| ||||| ||||||||| | |||||||||||||||||||| ||||| ||| | ||| Sbjct 54219 GTGCTTGAAGGCAAAATGCATGGATTTTTACGAATGTATTGGGCAAAGAAAATATTAGAA 54160 Query 189536 TGGAC 189540 ||||| Sbjct 54159 TGGAC 54155 >seq11786 Length=81810 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 135727 GGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTC 135786 ||||| || ||||||||| | || ||| || | ||||||||| ||||||||| | Sbjct 38153 GGTATCTGTGATAATTTATTAACAGCTACGGTTCGCGCCTGGGATTTAAACAAACCGTTA 38094 Query 135787 ATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACA-----GAAAAAC 135841 | || ||||||||||||||||| |||||||| |||||||| ||| | || Sbjct 38093 CTATTTTGTCCTGCAATGAATACAAGAATGTGGGATCATCCTATCACATCTTCGCAA--- 38037 Query 135842 ATATAGATACGTTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAG 135901 |||| | || | |||| | ||||| ||| ||||| || || |||| | || Sbjct 38036 ATATCGCAAC--TGAAATCTTGGGGTTACATTGAAATTCCGTGTATTTCTAAAACATTAA 37979 Query 135902 CATGTGGAGACGTAGGAAATGGTGCTATGGCAGAA 135936 ||| ||| ||||| ||||||||||||||| Sbjct 37978 TGTGTCAAGATGTAGGCTTGGGTGCTATGGCAGAA 37944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923048061455560