Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7989 118 1e-21 seq449 113 5e-20 seq4268 111 2e-19 seq945 111 2e-19 seq5713 109 6e-19 seq4379 98.7 1e-15 seq8209 84.2 3e-11 >seq7989 Length=79767 Score = 118 bits (130), Expect = 1e-21 Identities = 82/92 (89%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 79446 TTTAAAAAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 79505 Query 60111 ACATACTCACCACTATACTACCGAGG-ATTGA 60141 ||||| |||||||||||||||||| ||||| Sbjct 79506 GGATACTTACCACTATACTACCGAGGAATTGA 79537 >seq449 Length=135954 Score = 113 bits (124), Expect = 5e-20 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 135805 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 135746 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | ||||||||||||||||||| ||| Sbjct 135745 TTACCACTATACTACCGAGGAATGA 135721 >seq4268 Length=52723 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 23146 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 23087 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 23086 TTACCACTATACTACCGAGGA 23066 >seq945 Length=45805 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 9575 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 9634 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 9635 TTACCACTATACTACCGAGGA 9655 >seq5713 Length=114977 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || || | |||||||| || || || ||||| ||||||||||| | Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || || | || ||||||||||| ||||| || ||||| || | || Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || ||| |||| | ||| | || | | || ||||| | ||| || Sbjct 40881 ATTCCTTCCTTATCT-TGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGAC 40823 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| |||||||||||| || || | || || || ||||| ||||||||| Sbjct 40822 TTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTT 40771 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||||||||| |||| |||| || ||||| ||||| ||||||| ||||| | |||| Sbjct 41671 CAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTC 41612 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 |||| || ||||||||||| ||||| || || || || | || | | ||||| || Sbjct 41611 TTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATC 41552 Query 43091 CATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 ||| |||| | || ||| | | | || ||||| | ||| || |||| ||| || | Sbjct 41551 T-TGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAG 41493 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || |||| || || || ||||||||||| Sbjct 41492 TTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || || | |||||||| || || || ||||||||||| ||||| | Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || ||||| || || || ||||| ||||| || ||||| || | || Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | ||| | || | | || ||||| | ||| || Sbjct 41337 ATTC-CTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 41279 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||| || ||||| || |||| || || || ||||||||||| Sbjct 41278 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 >seq4379 Length=409 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || || | |||||||| || || || ||||||||||| ||||| | Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || ||||| || || || ||||| ||||| || ||||| || | || Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | ||| | || | | || ||||| | ||| || Sbjct 122 ATTC-CTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 64 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||| || ||||| || |||| || || || ||||||||||| Sbjct 63 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq8209 Length=47891 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || || || ||||||||||| || || ||||| |||||||| |||| Sbjct 19113 TCCTCCTCTCAATCGTAAGACCAAATGCAAAGTTGATTCTTTTTGGATATTGTAGTCAGA 19054 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || || | || || ||||| || |||||||| || | ||||||||||| Sbjct 19053 AAGGGTACGTCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTC 19000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571725473036920