Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5713 129 9e-25 seq4379 129 9e-25 seq12829 95.1 2e-14 seq11483 95.1 2e-14 seq7704 87.8 3e-12 seq11230 86.0 9e-12 >seq5713 Length=114977 Score = 129 bits (142), Expect = 9e-25 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||||||||||||| |||||||| ||||| ||||| ||| Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || |||||||| ||||| || || | | ||||||||| || ||| Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| ||||| ||| ||| Sbjct 40881 ATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACT 40822 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTT---TATTAGAA 146287 || || ||||| |||||||| || || ||||| | ||| || ||||||| || |||| Sbjct 40821 TCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTTCTACAAGAA 40762 Query 146288 AAATA 146292 ||||| Sbjct 40761 AAATA 40757 Score = 129 bits (142), Expect = 9e-25 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||||||||||||| |||||||| ||||||||||| || Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||| |||||| || || || || | | ||||||||| || ||| Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| ||||| ||| ||| Sbjct 41337 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACT 41278 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| ||||||||||| | ||| |||||||| Sbjct 41277 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||||||||||||| ||||| || ||||||||||| || Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||| |||||| || || || || | | ||||||||| || ||| Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||||||||| Sbjct 41109 ATTCCCTCTTTATCTTG 41093 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || ||||| || | || |||||||| ||||||||||| || Sbjct 41685 CCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAG 41626 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || ||||||||||| ||||| || || | | ||| ||||| || ||| Sbjct 41625 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGA 41566 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| ||||| ||| ||| Sbjct 41565 ATTCCTTCCTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACT 41506 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| ||||||||||| | ||| |||||||| Sbjct 41505 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 129 bits (142), Expect = 9e-25 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||||||||||||| |||||||| ||||||||||| || Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||| |||||| || || || || | | ||||||||| || ||| Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| ||||| ||| ||| Sbjct 122 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACT 63 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| ||||||||||| | ||| |||||||| Sbjct 62 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq12829 Length=36573 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||||||||| | ||| | | ||| |||| |||||||| ||||||||||| | Sbjct 35475 ATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAATCAAACGC 35416 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||| |||||||||||||| Sbjct 35415 TGTTGATCTGGAGGAATCCCTTCTTTATCTTG 35384 >seq11483 Length=76730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| || || | ||||| | ||| ||||||||||||||||| || |||||||| Sbjct 51029 ATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGATCAATCTC 50970 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| ||||| ||||| || Sbjct 50969 TGCTGATCCGGTGGAATACCTTCCTTATCCTG 50938 >seq7704 Length=122037 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| ||| | |||||||||||| |||| || || || || | || ||||| || || Sbjct 88612 AGCTGGTGTAGTGGACGAAGATTATCGAGGCAACGTCGGTGTCGTCTTGTTTAACCACTC 88553 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | || |||||||| | | || | ||| |||||||| |||| ||||| || ||| ||| Sbjct 88552 TGATCAAGATTTTGAAGTTAAAAAAGGCGATAGAATCGCTCAGTTAATCTGCGAACGAAT 88493 Query 10619 TTTATATCCTA 10629 ||| | |||| Sbjct 88492 TTTCCACCCTA 88482 >seq11230 Length=416 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| |||||||| | || |||||||| ||||| || || Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| || || |||||||| || || ||||||||||| || || || || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 191 ATGCCTTCTTTGTCTTG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743406608602880