Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5251 107 2e-18 >seq5251 Length=56147 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| |||||||| | | ||||||||| || ||||| | ||| ||||| || || || Sbjct 14868 ATATACGTATCTATCAATTTACTATACATCTCAGAATGTACATTTTCCATGGCGATTTGG 14927 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAA 16623 || ||||| || |||| ||||||| | ||| ||||| || | |||| || | | || Sbjct 14928 AATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAACGTT-CAACCAA 14986 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 ||| ||||| || || ||||| ||||||||||| || | ||||| |||||| | Sbjct 14987 GTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTG 15046 Query 16684 tttttC 16689 |||||| Sbjct 15047 TTTTTC 15052 Score = 102 bits (112), Expect = 8e-17 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16270 TATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 ||| || ||||| ||||| | ||| || |||||||| |||| ||| || | ||||||| Sbjct 14563 TATCAATTCGTTACTGAAAGT-TAAT-CCGGGCATTAGACCTCTTTTCTTCAGCCAAAAT 14620 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 || || ||||| ||| ||||| || ||||||||||| || ||||||||||| | || Sbjct 14621 ATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCAACGATTCTT 14680 Query 16388 TCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttA 16447 || || | || |||| | | |||||| | |||||||| ||| |||| ||| Sbjct 14681 TCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTGCCTTTTTCTTA 14740 Query 16448 ACACAGTTCATGTTCTCTATTGCATTAAA 16476 ||||| ||| | || || ||||| || Sbjct 14741 ACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 |||||||||| || | | |||||||| |||||| |||||||| || || ||||| || Sbjct 14074 TGACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACC 14133 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 | ||||| || |||||||||||||||| ||||| Sbjct 14134 ATTCAATGATATTATTTCCATAAAATCAAACGGATT 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462437483535400