Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq6746 250 2e-61 >seq6746 Length=106662 Score = 250 bits (276), Expect = 2e-61 Identities = 261/340 (77%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 |||||| | |||||| | |||||||| || ||||| ||||||||||| || || || Sbjct 4130 GGGGATCTCGGTCCTATTTATGGATTCCAGTGGAGGCATTTTGGAGCCGAGTACAAAGAT 4071 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | | |||| ||| ||||| || |||||||| |||||| | || ||| | || Sbjct 4070 ATGTTCGCCGATTACACTGGCCAAGGCGTTGATCAATTGCAAAATATAATAAATATGATC 4011 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| || || ||||| |||||||| |||||||| |||||||| || ||| | ||| Sbjct 4010 AAAACCAATCCTAACGATAGAAGAATGATTTTATGTGCCTGGAATCCTGTTGATTTACCT 3951 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATT 20456 |||||| || ||||| |||||| |||| | |||||||| || |||||| ||| | Sbjct 3950 AAAATGGCATTACCTCCGTGTCAT-TGCTTAGTGCAATTTTATGTAGCTAATGGTGAGCT 3892 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| || Sbjct 3891 TTCGTGTCTCATGTATCAACGCTCTGCTGATATGGGTCTAGGTGTACCTTTCAATATAGC 3832 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 |||||| | |||| || |||||||| || ||| ||||| Sbjct 3831 AAGTTACTCCTTGCTCACTTATATGATCGCTCATATTACA 3792 Score = 96.9 bits (106), Expect = 3e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 20039 ATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTAT 20098 || |||| || | |||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct 4368 ATCAATTCCCACTCTTAACTACGAAACGAGTATTTTGGAAAGGAGTCGTTGAGGAGTTAT 4309 Query 20099 TATGGTTTATTAAAGGATCAACAAAT 20124 | ||||| || ||||| ||||||||| Sbjct 4308 TGTGGTTCATCAAAGGTTCAACAAAT 4283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399121294306105