Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9555 109 4e-19 >seq9555 Length=64705 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCG 45181 |||||| ||||| || ||| || || || |||||||||||| ||| ||| | || Sbjct 29938 TAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT--CTTCCG 29881 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||||||||| ||||| | ||||||||||| || | ||| || ||| Sbjct 29880 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 29821 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || || || ||| || | | ||||| ||| || |||| || ||| Sbjct 29820 TCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATC 29761 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || ||||| ||||| ||||| ||||| |||||||| Sbjct 29760 GTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTT 29723 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCG 45181 |||||| ||||| || ||| || || || |||||||||||| ||| ||| | || Sbjct 30166 TAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT--CTTCCG 30109 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||||||||| ||||| | ||||||||||| || | ||| || ||| Sbjct 30108 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 30049 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || || || ||| || | | ||||| ||| || |||| || ||| Sbjct 30048 TCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATC 29989 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| ||||| || |||||||| Sbjct 29988 GTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395013139735669