Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5251 120 3e-22 >seq5251 Length=56147 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 |||||||||| || | |||||| ||||| |||||||| ||||| | |||| ||| Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAA--GTTAATCCGGGCATTAGACCTCTTTT 14607 Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 || | ||||||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 14608 CTTCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAA 14667 Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14403 || | | || ||| ||||| | ||||||| | | |||||| | |||||| || Sbjct 14668 TGCAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATC 14727 Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 | ||||| |||| | | |||||||||||| ||||| || Sbjct 14728 TGCCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| |||| || ||| ||||| || | | || ||||| || || | Sbjct 14033 TAAAAATCCGCATCCAATTTAAATACATTTTCCACCTCCGGTGACATAACTCCGCTTCTC 14092 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 | |||||||| ||||||||||||||| ||||| |||||||| | || |||||| ||||| Sbjct 14093 TTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCATTCAATGATATTATTTCC 14152 Query 13976 ATAAAATCAAATGGATT 13992 ||||||||||| ||||| Sbjct 14153 ATAAAATCAAACGGATT 14169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 14476 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14535 |||| ||||||| || |||||||| ||||| |||| |||||||| || || || || Sbjct 14874 GTATCTATCAATT--TA--CTATACATCTCAGAATGTACATTTTCCATGGCGATTTGGAA 14929 Query 14536 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCAAAT 14594 ||||| ||| |||| ||||| | ||| || ||| || | ||| | ||| |||| | Sbjct 14930 TCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAA-CGTTCAACCAAGT 14988 Query 14595 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14654 | || || || || |||||| ||||||||||| || || |||| |||||| | || Sbjct 14989 TCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTGTT 15048 Query 14655 GCTCTTC 14661 ||||| Sbjct 15049 TTTCTTC 15055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482267888094520