Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5713 105 5e-18 seq9555 104 2e-17 seq11230 98.7 8e-16 seq11483 95.1 9e-15 seq4379 89.7 4e-13 seq9601 86.0 5e-12 seq11905 84.2 2e-11 >seq5713 Length=114977 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | || ||||||||||| || ||||| |||| | ||| | | |||| Sbjct 40986 AGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCT 40927 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| || | ||| ||||| ||| | ||||||||||| Sbjct 40926 TCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCT 40867 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | || || | || ||| ||| | |||||| | Sbjct 40866 TGAATTT-TGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGT 40808 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| || ||||| ||||| || || || ||||||||| Sbjct 40807 TTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTT 40771 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | |||| ||| ||||| ||||||||||| || || || || | Sbjct 41685 CCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAG 41626 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| |||||||| || || |||| || | ||||||||| ||| Sbjct 41625 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGA 41566 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | | | || || | ||| ||| Sbjct 41565 ATTCCTTCCTTATCTTGAATTT-TAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGAC 41507 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || || |||||||| || || |||||||| Sbjct 41506 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | || |||||||||||||| || || |||| | ||| | | |||| Sbjct 41442 AGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCT 41383 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| || |||| || | ||| ||||| ||| | ||||| ||||| Sbjct 41382 TCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCT 41323 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | || || | ||| ||| ||| | || || | Sbjct 41322 TGAATTT-TAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGT 41264 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || |||||||| || || |||||||| Sbjct 41263 TTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 >seq9555 Length=64705 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| || ||||| ||||| ||||||||||| || ||| | | |||||| Sbjct 30974 TACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCATCTTC 30915 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| ||||| || || |||| | ||||||||| || || | |||||| || || Sbjct 30914 CAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTG 30855 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | |||||| | | | | ||||| |||||| ||| | ||||| |||| Sbjct 30854 GATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTT 30795 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | ||||| || ||||||||||| Sbjct 30794 TCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | |||||| || ||||||||||| |||||||||||| || ||| | | ||||| Sbjct 30163 TACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 30104 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | |||||| || || |||| | ||||||||| || || | ||||| || || Sbjct 30103 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 30044 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | |||||| | | | | ||||| |||||| ||| | ||||| |||| Sbjct 30043 GATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTT 29984 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | ||||| || ||||||||||| Sbjct 29983 TCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | |||||| || ||||||||||| |||||||||||| || ||| | | ||||| Sbjct 29935 TACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 29876 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | |||||| || || |||| | ||||||||| || || | ||||| || || Sbjct 29875 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 29816 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | |||||| | | | | ||||| |||||| ||| | ||||| |||| Sbjct 29815 GATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTT 29756 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || || | ||||| || || || ||||| |||| Sbjct 29755 TCCCGTAAGAGTTTTCACGAAGATCTGCATGTTTA 29721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | |||||| || ||||||||||| |||||||||||| || ||| | | ||||| Sbjct 30746 TACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 30687 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | ||| || || || |||| | ||||||||| || || | ||||| || || Sbjct 30686 GAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTG 30627 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| | || ||||| | | | | ||||| ||||| ||| | || || ||| Sbjct 30626 GATTT-TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTT 30568 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| | ||||| || ||||||||||| Sbjct 30567 TTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 >seq11230 Length=416 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | |||| ||||| || |||||||| ||||| |||||||| | Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||||||| ||||| || || |||| | ||||||||| || || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || || | |||||| | | | | ||||| |||||| | Sbjct 191 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 132 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||| ||||| | ||||| || ||||||||||| Sbjct 131 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq11483 Length=76730 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 ||||||||||||| ||||| | || ||| | | |||||| |||||||| || || ||| Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | | ||| || |||||| || | ||||||||||| ||| | || ||||| | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 ||| | ||| || ||| ||| | ||| || |||| || || | |||||| || | Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 18316 AAATTTGCATTTTTAAA 18332 |||| ||||| | |||| Sbjct 50857 AAATCTGCATCTGTAAA 50841 >seq4379 Length=409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | || |||||||||||||| || || |||| | ||| | | |||| Sbjct 227 AGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCT 168 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| || |||| || | ||| ||||| ||| | ||||| ||||| Sbjct 167 TCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCT 108 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | || || | ||| ||| ||| | || || | Sbjct 107 TGAATTT-TAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGT 49 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || |||||||| || || |||||||| Sbjct 48 TTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq9601 Length=294 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | |||||| || ||||||||||| |||||||||||| || ||| | | ||||| Sbjct 62 TACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 121 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | ||| || || || |||| | ||||||||| || || | ||||| || || Sbjct 122 GAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTG 181 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| | || ||||| | | | | ||||| ||||| ||| | || || ||| Sbjct 182 GATTT-TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTT 240 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| | ||||| || ||||||||||| Sbjct 241 TTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq11905 Length=336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | |||| ||||| || ||||||||||| |||||||||||| | Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | ||| || || || |||| | ||||||||| || || Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || |||| | || ||||| | | | | ||||| ||||| Sbjct 207 ATACCTTCTTTGTCTTGGATTT-TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAAC 265 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| ||||| | ||||| || ||||||||||| Sbjct 266 TTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379284410866305