Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6746 136 5e-27 seq5251 132 6e-26 >seq6746 Length=106662 Score = 136 bits (150), Expect = 5e-27 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAA 63279 ||| || |||| |||||||| | |||| | || | | |||| | ||| |||| | Sbjct 29660 AGGGCAGTCATTTGGACACATAAGACTCCACGTTTGGTTA-CTTTCAACACGTCTCATGA 29602 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | ||||||||||| ||||| ||||||| |||||| ||||| || ||||| || | Sbjct 29601 ATTCGTCAGGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTTACCGG 29542 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 |||| | | || | ||| | | |||||| | |||||| ||||| || || |||| Sbjct 29541 AATTCATCCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATAGATGG 29482 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | | || || | |||||| ||||| ||||| | |||||| || |||| ||| || | Sbjct 29481 CGAAAGCGCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATTGTAGA 29422 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 || | ||| |||| || ||| ||||||| ||||| || || || ||||| Sbjct 29421 CTTGAAGCATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATA 29370 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 ||||| ||||| || || || | ||| | | |||| |||||| || || ||||| ||| Sbjct 31158 TAACTTGGATCGGCCATGTGAACATTTAAACTTTGAGATTGATCAATAAAAGCTCCTCTG 31099 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA 62262 || || |||||||| | | ||||||||| ||||||||||| |||||||||| Sbjct 31098 TCGGCGGCCATTTTCAACACAGTCTTTTGTTTAATTTCCCAAACGGTTTTATAAA 31044 >seq5251 Length=56147 Score = 132 bits (146), Expect = 6e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 33831 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 ||||||| ||| || | ||| ||||| ||||| ||||||||| || ||||| | Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 ||||| ||||| || || ||||| |||||| |||| || ||||||| ||||||||| | Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010 || ||||| | || || || || || || |||||| |||||||||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 | || ||||| | |||||| |||||| | || | | |||||| ||| ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATC 15085 Score = 122 bits (134), Expect = 1e-22 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || ||||||||| || || | |||||||||||| || | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || |||||||| ||||| ||||| || || ||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGG 33780 ||| | ||| || ||| || || | |||| ||||| | ||||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 |||| || || ||||| ||||| ||||| || ||||| ||||| Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||||||||| || | | |||||||| || | |||||| ||||| || ||||| || Sbjct 14075 GACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCA 14134 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 | ||||||||| ||||||| ||||||||||||||| | ||| ||| Sbjct 14135 TTCAATGATATTATTTCCATAAAATCAAACGGATTGCTGGCATCGTA 14181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629716128511920