Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6746 161 9e-35 seq5251 122 8e-23 >seq6746 Length=106662 Score = 161 bits (178), Expect = 9e-35 Identities = 309/453 (68%), Gaps = 2/453 (0%) Strand=Plus/Minus Query 37918 TCGTA-TTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 ||||| |||| | |||||||||| ||| |||| || | ||| |||| || || || Sbjct 29713 TCGTACTTCT-TGTATAATTTGTCAAATTCATCACCGTAACAATCAGATAAACCAGGGCA 29655 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 || ||||||||| ||| ||| || | |||| || ||| ||| ||| || Sbjct 29654 GTCATTTGGACACATAAGACTCCACGTTTGGTTACTTTCAACACGTCTCATGAATTCGTC 29595 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 ||| | ||||| || ||||||||||| | |||||| |||||||| || |||| | Sbjct 29594 AGGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTTACCGGAATTCAT 29535 Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 | ||| || ||| ||||| ||||| | ||||| ||||||| ||| || | | || Sbjct 29534 CCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATAGATGGCGAAAGC 29475 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 ||||||||||| | ||||| |||| | ||||| | |||| ||| || | | | Sbjct 29474 GCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATTGTAGACTTGAAG 29415 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 |||||| || | |||||| ||| ||| || | || || |||||| | || ||| Sbjct 29414 CATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATAACTGTTGGTACCTCT 29355 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336 ||| | ||| || ||| ||||| || ||| ||| || || |||||||| | Sbjct 29354 GATACAATGTATATGCACTCCGATTCCTCCGGCAGATTTGGAAATCAAAGCGCAAGCGGT 29295 Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATC 38369 || |||| ||||||||| || || ||||| || Sbjct 29294 TAGGGTATTAAATATACCCTCAATGCTGTCCTC 29262 >seq5251 Length=56147 Score = 122 bits (134), Expect = 8e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| ||| | ||| ||| || |||||||||||||| | |||| ||| || Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| |||||||| ||| ||||| || || || || |||||||||||||| Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 11774 ACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCT 11830 || | |||||| ||| | || ||| || | || |||||| | |||||||| || Sbjct 14672 ACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTGCC 14731 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 || || || || ||| ||||||||| || || || || Sbjct 14732 TTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 11895 TTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTT 11954 ||| ||| |||||||| ||| ||||||||| || ||||| | ||||||||| || |||| Sbjct 14866 TTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACATTTTCCATGGCGATTT 14925 Query 11955 GAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTA 12014 | |||||||||||| ||| || || | | || || || || || | ||| | | Sbjct 14926 GGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAACGTTCAACCA 14985 Query 12015 AATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 | ||||| || ||||| |||||| | ||||||||| |||| || || ||||| | Sbjct 14986 AGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATT 15045 Query 12075 ATTTTTCGTCT 12085 |||||| ||| Sbjct 15046 GTTTTTCTTCT 15056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468449314798160