Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6746 138 1e-27 seq5251 123 3e-23 >seq6746 Length=106662 Score = 138 bits (152), Expect = 1e-27 Identities = 212/300 (71%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTT 66067 || ||||| || |||| |||||||| | |||| | || | | |||| | ||| | Sbjct 29665 AAACCAGGGCAGTCATTTGGACACATAAGACTCCACGTTTGGTTA-CTTTCAACACGTCT 29607 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 ||| || ||||||||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 29606 CATGAATTCGTCAGGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTT 29547 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || | |||| | | || | ||| | | |||||| |||||| ||||| || || Sbjct 29546 ACCGGAATTCATCCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATA 29487 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||||| | | | || || | |||||| ||||| ||||| | |||||| || |||| ||| Sbjct 29486 GATGGCGAAAGCGCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATT 29427 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 || ||| | ||| |||| || |||||| ||| ||||| || || || ||||| || Sbjct 29426 GTAGACTTGAAGCATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATAACT 29367 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 64941 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 65000 ||||| ||||| || || || | ||| | | |||| |||||| || || ||||| ||| Sbjct 31158 TAACTTGGATCGGCCATGTGAACATTTAAACTTTGAGATTGATCAATAAAAGCTCCTCTG 31099 Query 65001 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 65055 || || |||||||| | | ||||||||| ||||||||||| |||||||||| Sbjct 31098 TCGGCGGCCATTTTCAACACAGTCTTTTGTTTAATTTCCCAAACGGTTTTATAAA 31044 >seq5251 Length=56147 Score = 123 bits (136), Expect = 3e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 36407 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 ||||||| ||| || | ||| ||||| ||||| ||||||||| || ||||| | Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 ||||| ||||| ||||| ||||| |||||| |||| || ||||||| || |||||| | Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 || ||||| | || || || || || || || ||| |||||||||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 | || ||||| | |||||| | |||| | || | | |||||| ||| ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATC 15085 Score = 107 bits (118), Expect = 3e-18 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || |||||||| || || | |||||||||||| || | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || ||||| || || ||||| || || ||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGG 36356 ||| | ||| || ||| || || | |||| ||||| | ||||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 |||| || || ||||| |||||||| || || ||||| ||||| Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 |||||||| ||||||||||| || || || |||| | |||| ||||||||||| | Sbjct 14293 AATCTATCAGCGACAAATTCAATGTACGTCGTCATTAAATCACTGTTCATTCCTATCATA 14352 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT- 36105 ||||| | ||| ||| | |||||||||||| || ||| ||||| ||||| Sbjct 14353 GATACTGGTAAAGCTTTAGTCAAAAATTCTTGTTCTATTACGACAGCGTCACGAATAATT 14412 Query 36106 --AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 36163 || |||| | ||| |||| ||| | | |||| ||| |||||||| || ||| Sbjct 14413 TCAGTTATTTC---TTCAACACTAGGTTTCTGAACCAAATATTTGAACATCAAGCAAGCG 14469 Query 36164 AAATCGCAGTGTAGACCCT 36182 ||||| |||| ||||| Sbjct 14470 AAATCAGTATGTAAACCCT 14488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||||||||| || | | |||||||| || | |||||| ||||| || |||||||| Sbjct 14075 GACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCA 14134 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTG 35947 | |||||||| ||||||| ||||| || |||||| Sbjct 14135 TTCAATGATATTATTTCCATAAAATCAAACGGATTG 14170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658066760134760