Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9601 136 4e-27 seq9555 136 4e-27 seq11905 132 5e-26 seq11230 118 1e-21 seq5251 113 4e-20 seq5713 100 3e-16 seq4379 100 3e-16 >seq9601 Length=294 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| || || |||||||| ||||| || |||||| Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||| || || || || |||||| | ||| || ||||| || Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | |||||||| ||||| || Sbjct 165 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 224 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || ||||| | ||||| ||||| ||||||||| Sbjct 225 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 272 >seq9555 Length=64705 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| || || |||||||| ||||| || |||||| Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||| || || || || |||||| | ||| || ||||| || Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | |||||||| ||||| || Sbjct 30643 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 30584 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || ||||| | ||||| ||||| ||||||||| Sbjct 30583 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 30536 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || || || ||||| ||||| || || ||| Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||| || || |||||| | ||| || ||||| || Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | ||| | |||||||| ||||| || Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 30812 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || ||||| | |||||| ||||| ||||||||| Sbjct 30811 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCATA 30764 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| || || |||||||| ||||| || |||||| Sbjct 30180 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30121 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||| ||||| || || |||||| | ||| || ||||| || Sbjct 30120 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30061 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | ||||| | ||||| || Sbjct 30060 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 30001 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || || || | ||||| ||||| ||||||||| Sbjct 30000 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCATA 29953 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| || || |||||||| ||||| || |||||| Sbjct 29952 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 29893 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||| ||||| || || |||||| | ||| || ||||| || Sbjct 29892 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 29833 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | ||||| | ||||| || Sbjct 29832 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 29773 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| || || || | ||||| ||||| || ||||| Sbjct 29772 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCAT 29726 >seq11905 Length=336 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| || || || |||| || || |||||||| ||||| || |||||| Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||| || || || || |||||| | ||| || ||||| || Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | |||||||| ||||| || Sbjct 207 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 266 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || ||||| | ||||| ||||| ||||||||| Sbjct 267 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 314 >seq11230 Length=416 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| || || || |||| || || ||||| ||||| || || || ||| Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||| || || |||||| | ||| || ||||| || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | ||| | |||||||| ||||| || Sbjct 191 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 132 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || ||||| | |||||| ||||| ||||||||| Sbjct 131 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCATA 84 >seq5251 Length=56147 Score = 113 bits (124), Expect = 4e-20 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 52544 ACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACA 52603 |||||| || ||||| ||||||| |||||||| |||| |||||| | | || | Sbjct 14754 ACAATG--CCATGTGTTAAGAAAAAGGCAGATTGGGCTTTGAGATGGATTGCTGATGAAA 14697 Query 52604 AAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGG 52663 |||| ||||||| |||| | | || || ||||| || |||||| | |||||||| | Sbjct 14696 AAGCTACTTTTGGCGAAAGAATCGTTGCATTTGCAGCTGTTGAAGGTATCTTTTTTTCCG 14637 Query 52664 GTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTA 52723 |||||||||| |||||||||| | || | || |||||||||| | || || | Sbjct 14636 GTAGTTTTGCTGCAATATTTTGGCTGAAGAAAAGAGGTCTAATGCCCGGATTAACTTTCA 14577 Query 52724 GCAACGAGTTGATATC 52739 | ||||| |||||||| Sbjct 14576 GTAACGAATTGATATC 14561 >seq5713 Length=114977 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||||||||| ||||||||| | || || ||||| || ||||| || Sbjct 41427 GTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCG 41368 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| |||||||||||||| || || || |||||||| || ||| |||| | ||| Sbjct 41367 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATC-TTGAATTTTAGCTTT 41309 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || ||| |||| || || || | || | || || || || || || Sbjct 41308 CACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 41249 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| ||||| ||||||||| || Sbjct 41248 TTTGACGAAGATTTGCATACCT 41227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | | ||| || ||||| | || || |||||||| || |||||||| Sbjct 41689 ATTGCCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATC 41630 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | || || |||||| | ||||||||||| |||| |||||||| ||||| || Sbjct 41629 AGAGAGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGG 41570 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 || || ||||| || || ||| |||| | ||| | | || | || ||| |||| | Sbjct 41569 GGGAATTCCTTCCTTATC-TTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTT 41511 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || || | || | || || || || || ||||| ||||| ||||||||| || Sbjct 41510 CGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATACCT 41455 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| || ||||||||| | || || ||||| || ||||| || Sbjct 41199 GTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCG 41140 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| |||||||||||||| || || || || ||||| || ||| |||| | ||| Sbjct 41139 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATC-TTGAATTTTGGCTTT 41081 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | ||| | || ||| |||| || || || | || | || || || ||||| || Sbjct 41080 AACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAGT 41021 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| ||||| || |||||| || Sbjct 41020 TTTAACGAAAATCTGCATACCT 40999 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||| || || |||||| | || || ||||| | ||||||||| Sbjct 40971 GTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACCA 40912 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| |||||||||||||| || || || ||||| || || ||| |||| | ||| Sbjct 40911 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATC-TTGAATTTTGGCTTT 40853 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | || ||| | || || || || | || | || || || ||||| || Sbjct 40852 TACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAAAGT 40793 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 40792 TTTGACGAAGATCTGCAT 40775 >seq4379 Length=409 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||||||||| ||||||||| | || || ||||| || ||||| || Sbjct 212 GTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCG 153 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| |||||||||||||| || || || |||||||| || ||| |||| | ||| Sbjct 152 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATC-TTGAATTTTAGCTTT 94 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || ||| |||| || || || | || | || || || || || || Sbjct 93 CACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 34 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| ||||| ||||||||| || Sbjct 33 TTTGACGAAGATTTGCATACCT 12 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||||||||| |||| |||||||||||||| || || || ||||| || Sbjct 398 TCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTA 339 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||||| | || | || ||| | || || || || | || | Sbjct 338 TC-TTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTAAT 280 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || || || || ||||| ||||| ||||||||| || Sbjct 279 AGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATACCT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495984077888800