Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6746 141 1e-28 seq5251 129 8e-25 >seq6746 Length=106662 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || ||| |||| || ||||||||||| ||||| ||||||| |||||| ||||| | Sbjct 29614 ACACGTCTCATGAATTCGTCAGGAATCCATAGAGCGATAAATAAATCTCTACATCTATAC 29555 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || ||||| || | |||| | | || | ||| | | |||||| | |||||| ||| Sbjct 29554 TCTTCGTTACCGGAATTCATCCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGT 29495 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || || || ||||| | | | || |||| |||||| ||||| ||||| | |||||| || Sbjct 29494 TCTAAATAGATGGCGAAAGCGCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCA 29435 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 |||| ||| || ||| | ||| |||| || |||||| ||| ||||| || || || Sbjct 29434 GTGTAATTGTAGACTTGAAGCATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAA 29375 Query 80179 ATATAGCT 80186 ||||| || Sbjct 29374 ATATAACT 29367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||||||| ||| |||||| || || | ||||| ||||| || || || | || Sbjct 31193 TCCATCCGAAGAGATGCATTGAAGTGAGGGTACTGTAACTTGGATCGGCCATGTGAACAT 31134 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | | |||| |||||| || || ||||| ||||| || |||||||| | | |||| Sbjct 31133 TTAAACTTTGAGATTGATCAATAAAAGCTCCTCTGTCGGCGGCCATTTTCAACACAGTCT 31074 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAA 78934 ||||| ||||||||||| |||||||||| Sbjct 31073 TTTGTTTAATTTCCCAAACGGTTTTATAAA 31044 >seq5251 Length=56147 Score = 129 bits (142), Expect = 8e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 50209 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 ||||||| ||| || | ||| ||||| ||||| ||||||||| || ||||| | Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 ||||| ||||| || || ||||| |||||| |||| || ||||||| ||||||||| | Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 || |||||| | || || || || || || || ||| |||||||||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 | || ||||| |||||||| | ||| | || | | |||||| ||| ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATC 15085 Score = 116 bits (128), Expect = 5e-21 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || | |||||| || || | |||||||||||| || | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || ||||| ||||| ||||| || || ||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGG 50158 |||| | ||| || ||| || | || | |||| ||||| | ||||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 |||| || || ||||| ||||| ||||| || ||||| ||||| Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||||||||| || | | |||||||| || | |||||| ||||| || ||||| || Sbjct 14075 GACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCA 14134 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749 | ||||||||| ||||||| ||||||||||||||| Sbjct 14135 TTCAATGATATTATTTCCATAAAATCAAACGGATTG 14170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718153077917960