Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5251 125 7e-24 >seq5251 Length=56147 Score = 125 bits (138), Expect = 7e-24 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 |||||||||| || | |||||| ||||| |||||||| ||||| | |||| ||| Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAA--GTTAATCCGGGCATTAGACCTCTTTT 14607 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | |||||||||||||||||| |||||||| || || || ||||| || ||||| Sbjct 14608 CTTCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAA 14667 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 || | | || ||| ||||| | ||||||| | | |||||| | |||||| || Sbjct 14668 TGCAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATC 14727 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 | ||||| |||| | | |||||||||||| ||||| || Sbjct 14728 TGCCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| |||| ||| ||| ||||| || | | || ||||| || || | Sbjct 14033 TAAAAATCCGCATCCAATTTAAATACATTTTCCACCTCCGGTGACATAACTCCGCTTCTC 14092 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 | |||||||| ||||||||||||||| ||||| |||||||| | || |||||| ||||| Sbjct 14093 TTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCATTCAATGATATTATTTCC 14152 Query 13644 ATAAAATCAAATGGATT 13660 ||||||||||| ||||| Sbjct 14153 ATAAAATCAAACGGATT 14169 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 14144 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14203 |||| ||||||| || |||||||| ||||| |||| |||||||| || || || || Sbjct 14874 GTATCTATCAATT--TA--CTATACATCTCAGAATGTACATTTTCCATGGCGATTTGGAA 14929 Query 14204 ACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAAT 14262 ||||| || |||| ||||| | ||| ||||| || | ||| | ||| |||| | Sbjct 14930 TCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAA-CGTTCAACCAAGT 14988 Query 14263 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14322 | || || || || |||||| ||||||||||| || || |||| |||||| | || Sbjct 14989 TCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTGTT 15048 Query 14323 GCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 ||||| || || ||| |||||| ||||||| Sbjct 15049 TTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATCCT 15087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479650709822600