Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5251 120 3e-22 >seq5251 Length=56147 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 |||||||||| || | |||||| ||||| |||||||| ||||| | |||| ||| Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAA--GTTAATCCGGGCATTAGACCTCTTTT 14607 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | ||||||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 14608 CTTCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAA 14667 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || | | || ||| ||||| | ||||||| | | |||||| | |||||| || Sbjct 14668 TGCAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATC 14727 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 | ||||| |||| | | ||||||||| || |||||||| Sbjct 14728 TGCCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| |||| ||| ||| ||||| || | | || ||||| || || | Sbjct 14033 TAAAAATCCGCATCCAATTTAAATACATTTTCCACCTCCGGTGACATAACTCCGCTTCTC 14092 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 | |||||||| ||||||||||||||||||||| |||||||| | || |||||| ||||| Sbjct 14093 TTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCATTCAATGATATTATTTCC 14152 Query 13432 ATAAAATCGAATGGATT 13448 |||||||| || ||||| Sbjct 14153 ATAAAATCAAACGGATT 14169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 13932 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAA 13991 |||| ||||||| || |||||||| ||||| |||| ||||| || || || || || Sbjct 14874 GTATCTATCAATT--TA--CTATACATCTCAGAATGTACATTTTCCATGGCGATTTGGAA 14929 Query 13992 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGT 14050 ||||| ||| |||| ||||| | ||| || || || | ||| | ||| |||||| Sbjct 14930 TCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAA-CGTTCAACCAAGT 14988 Query 14051 TTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14110 | || || ||||| |||||| ||||||||||| || || |||| |||||| | || Sbjct 14989 TCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTGTT 15048 Query 14111 GCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 ||||| || || ||| |||||| ||||||| Sbjct 15049 TTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATCCT 15087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478511693361960