Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq11905 134 1e-26 seq11230 116 3e-21 seq9601 116 3e-21 seq9555 116 3e-21 seq12829 91.5 1e-13 >seq11905 Length=336 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||||||| | ||| || ||||| | ||||| ||| | Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || | ||| || ||||| || ||||||| ||||| |||| || Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||||| | | | ||||||| | ||| || Sbjct 207 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 266 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 267 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq11230 Length=416 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||||||| | ||| || || || | |||||| || | Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || ||||| ||||| ||||| || ||||||| ||||| |||| || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | | | ||||||| | |||||| Sbjct 191 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 132 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| || |||||||| ||||||||||| Sbjct 131 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq9601 Length=294 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| || || || | ||| || ||||| | ||||| ||| | Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || | ||| || ||||| || ||||||| ||||| |||| || Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||||| | | | ||||||| | ||| || Sbjct 165 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 224 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 225 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| || || || | ||| || ||||| | ||||| ||| | Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || | ||| || ||||| || ||||||| ||||| |||| || Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||||| | | | ||||||| | ||| || Sbjct 30643 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 30584 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 30583 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| || || || | ||| || ||||| | ||||| ||| | Sbjct 30180 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30121 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || | |||||| ||||| || ||||||| ||||| |||| || Sbjct 30120 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30061 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | ||||| | | | ||||| | |||||| Sbjct 30060 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 30001 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||||||||| ||||||||||| Sbjct 30000 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| |||||||| | ||||| || | Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || ||||| ||||| ||||| || ||||||| ||||| |||| || Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | | | ||||||| | |||||| Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 30812 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| || |||||||| ||||||||||| Sbjct 30811 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| || || || | ||| || ||||| | ||||| ||| | Sbjct 29952 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 29893 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || | |||||| ||||| || ||||||| ||||| |||| || Sbjct 29892 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 29833 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | ||||| | | | ||||| | |||||| Sbjct 29832 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 29773 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || |||||||| || ||||||||||| || || ||||| || Sbjct 29772 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTT 29723 >seq12829 Length=36573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | ||| ||||| || || ||||| | || || | ||||| |||||||||||| Sbjct 35481 TTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAATC 35422 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 || ||||||||||| | || | |||||||| || || || ||| || | | Sbjct 35421 AAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTTCT 35362 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | || || || || || || | ||||| ||||| ||||| || ||||| ||||| Sbjct 35361 ATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAAAG 35302 Query 43102 ATTTGCAT 43109 |||||||| Sbjct 35301 ATTTGCAT 35294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381309692675562