Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6746 145 1e-29 seq5251 132 6e-26 >seq6746 Length=106662 Score = 145 bits (160), Expect = 1e-29 Identities = 212/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 ||| ||||| || ||||| |||||||| | |||| | | | | || ||| | Sbjct 29666 TAAACCAGGGCAGTCATTTGGACACATAAGACTCCACGTTTGGTTACTTTCAACACGTCT 29607 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || ||||||||||| ||||| ||||||| |||||| ||||| ||| ||||| Sbjct 29606 CATGAATTCGTCAGGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTT 29547 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || | |||| | | || | ||| | | |||||| | |||||| ||||| || || Sbjct 29546 ACCGGAATTCATCCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATA 29487 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||||| | | | || || | |||||| ||||| ||||| | |||||| || |||| ||| Sbjct 29486 GATGGCGAAAGCGCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATT 29427 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 || ||| | ||| |||| || |||||| ||| | ||||| || || || ||||| || Sbjct 29426 GTAGACTTGAAGCATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATAACT 29367 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 70903 TAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTG 70962 || || |||||||| ||||||| ||| | ||| |||||| || || ||||| ||| Sbjct 31158 TAACTTGGATCGGCCATGTGAACATTTAAACTTTGAGATTGATCAATAAAAGCTCCTCTG 31099 Query 70963 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 71017 || || |||||||| | | ||||||||| ||||||||||| |||||||||| Sbjct 31098 TCGGCGGCCATTTTCAACACAGTCTTTTGTTTAATTTCCCAAACGGTTTTATAAA 31044 >seq5251 Length=56147 Score = 132 bits (146), Expect = 6e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42314 TTTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 ||||||| ||| || | ||| ||||| ||||| ||||||||| || ||||| | Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 ||||| ||||| || || ||||| |||||| ||||||| |||||||| || |||||| | Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 42434 CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 42493 || |||||| | || || ||||| || || || ||| |||||||||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 42494 ACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 | || ||||| | |||||| || ||| | | | | |||||| ||| ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATC 15085 Score = 116 bits (128), Expect = 5e-21 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || |||||||| || || | |||||||||||| || | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| | ||||| || ||||| ||||| ||||| || || ||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGG 42263 ||| | ||| || ||| || || | |||| ||||| | ||||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 |||| || || ||||| ||||| ||||| || ||||| ||||| Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||||| || | | |||||||| || | |||||| ||||| || || || || Sbjct 14075 GACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCA 14134 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTG 41854 | ||||||||| ||||||| ||||||||||||||| Sbjct 14135 TTCAATGATATTATTTCCATAAAATCAAACGGATTG 14170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671031071085640