Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6746 116 5e-21 seq5251 109 8e-19 >seq6746 Length=106662 Score = 116 bits (128), Expect = 5e-21 Identities = 233/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || | || ||||||||||||||||| | || || |||| ||| Sbjct 4130 GGGGATCTCGGTCCTATTTATGGATTCCAGTGGAGGCATTTTGGAGCCGAGTACAAAGAT 4071 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 || | | || || | || || || |||||||||||||| | || || | | | Sbjct 4070 ATGTTCGCC-GATTACACTGGCCAAGGCGTTGATCAATTGCAAAATATAATAAATATGAT 4012 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||| |||||||| | ||||| || || | | || | |||||||||| ||||| | Sbjct 4011 CAAAACCAATCCTAACGATAGAAGAATGATTTTATGTGCCTGGAATCCTGTTGATTTACC 3952 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--CGATGGCAAA 70303 |||||||| |||| |||||||| || || | || ||||| ||| |||| | Sbjct 3951 TAAAATGGCATTACCTCCGTGTCATTGCTTAGTGCAATTTTA--TGTAGCTAATGGTGAG 3894 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 | || || | |||||||| | ||| || ||||| || |||||||| || || || Sbjct 3893 CTTTCGTGTCTCATGTATCAACGCTCTGCTGATATGGGTCTAGGTGTACCTTTCAATATA 3834 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||||| || || || | || | ||||| ||||| ||||| Sbjct 3833 GCAAGTTACTCCTTGCTCACTTATATGATCGCTCATATTAC 3793 >seq5251 Length=56147 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| || || || || || |||| | | | |||||||| | |||| | | Sbjct 14772 CTCTTCAATGCGATTGAAACAATGCCATGTGTTAAGAAAAAGGCAGATTGGGCTTTGAGA 14713 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| || || || | | | ||| ||| | || ||||| || || || || Sbjct 14712 TGGATTGCTGATGAAAAAGCTACTTTTGGCGAAAGAATCGTTGCATTTGCAGCTGTTGAA 14653 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || ||||| ||||| ||||||||||| || || |||||||| ||||| | || || ||| Sbjct 14652 GGTATCTTTTTTTCCGGTAGTTTTGCTGCAATATTTTGGCTGAAGAAAAGAGGTCTAATG 14593 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||| | || ||||||||| || ||||| |||| |||| Sbjct 14592 CCCGGATTAACTTTCAGTAACGAATTGATATCAAGAGATGAGG 14550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740939806099640