Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5713 150 1e-31 seq11905 147 2e-30 seq9601 147 2e-30 seq9555 147 2e-30 seq4379 140 2e-28 seq11230 120 2e-22 seq12829 109 4e-19 seq11483 89.7 4e-13 >seq5713 Length=114977 Score = 150 bits (166), Expect = 1e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || ||||| | || || |||||||| || ||||||||| Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| |||||||| |||||| | || | |||||| || || ||| Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||||| |||||| | || ||||||||||| ||| || Sbjct 40881 ATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACT 40822 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || | || ||||||||||| |||| |||||| || || || ||||| ||| Sbjct 40821 TCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTT 40771 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | ||| || || || || || ||||| |||||||| || || ||||| Sbjct 41687 TGCCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAG 41628 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| |||| |||||||||||||||| |||||| | || | ||||||||| || | Sbjct 41627 AGAGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGG 41568 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||||||||| || || |||||| ||| || || | || ||||||||||| ||| Sbjct 41567 GAATTCCTTCCTTATCTTGAATTTTAGCT-TTCACGTTCTCGATGGTATCGCTGGGTTCG 41509 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | ||||| |||||||| || | ||||| || || ||||||||| Sbjct 41508 ACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 41458 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || ||||| | || || || ||||| || || |||||| Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||| ||||||||| ||| | || | |||||| || || ||| Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| ||||| || ||||||| || || |||| ||||||||||| ||| || Sbjct 41109 ATTCCCTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGACT 41050 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||| |||||||| |||| |||||| || ||||| |||||| Sbjct 41049 TCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCATA 41002 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || ||||| | || || |||||||| || || |||||| Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||| ||||||||| ||| | || | |||||| || || ||| Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| | || ||||||||||| ||| || Sbjct 41337 ATTCCTTCTTTATCTTGAATTTTAGCT-TTCACATTCTCGATGGTATCGCTGGGTTCGAC 41279 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||| |||||||| || | ||||| || || ||||||||| Sbjct 41278 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 41230 >seq11905 Length=336 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || |||||||||||||| |||||||| |||||||| ||||| | |||| |||| Sbjct 101 TAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTC 160 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 161 TTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 220 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 ||||| ||| || || |||| || || ||| || || ||||| || || | Sbjct 221 TTGGATTTTAGCT-TTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCG 279 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || |||||||| || |||||||||||| Sbjct 280 TTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 314 >seq9601 Length=294 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||||||||| |||||||| |||||||| ||||| | |||| |||| Sbjct 59 TAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTC 118 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 119 TTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTC 178 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 ||||| ||| || || |||| || || ||| || || ||||| || || | Sbjct 179 TTGGATTTTAGCT-TTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCG 237 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || |||||||| || |||||||||||| Sbjct 238 TTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 272 >seq9555 Length=64705 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||||||||| |||||||| |||||||| ||||| | |||| |||| Sbjct 30749 TAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTC 30690 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 30689 TTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTC 30630 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 ||||| ||| || || |||| || || ||| || || ||||| || || | Sbjct 30629 TTGGATTTTAGCT-TTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCG 30571 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || |||||||| || |||||||||||| Sbjct 30570 TTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 30536 Score = 138 bits (152), Expect = 8e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||||||||| |||||||| |||||||| ||||| | |||| |||| Sbjct 30166 TAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTC 30107 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 30106 TTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 30047 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| || |||| || || || || || || || || || || Sbjct 30046 TTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGT 29987 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || |||||||| || |||||||||||| Sbjct 29986 TTTTCCCGTAAGAGTTTTCACGAAAATTTGCATA 29953 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||||||||| |||||||| |||||||| ||||| | |||| |||| Sbjct 29938 TAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTC 29879 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 29878 TTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 29819 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| || |||| || || || || || || || || || || Sbjct 29818 TTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGT 29759 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||| || || |||||||| || || || ||||| ||| Sbjct 29758 TTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTTT 29722 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||||||||| || ||||| |||||||| || || | |||| | ||| Sbjct 30976 AATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCATCT 30917 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || ||||| || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 30916 TCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCT 30857 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| || |||| || || ||| || || || || || || ||| Sbjct 30856 TGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTT 30797 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| || |||||||||||| Sbjct 30796 TTTCCGGTGAGCGTTTTCACGAAAATTTGCATA 30764 >seq4379 Length=409 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || ||||| | || || |||||||| || || |||||| Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||| ||||||||| ||| | || | |||||| || || ||| Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| | || ||||||||||| ||| || Sbjct 122 ATTCCTTCTTTATCTTGAATTTTAGCT-TTCACATTCTCGATGGTATCGCTGGGTTCGAC 64 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||| |||||||| || | ||||| || || ||||||||| Sbjct 63 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 15 Score = 107 bits (118), Expect = 1e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 15201 TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTC 15260 |||| | ||||| |||||||| |||||| | || | |||||| || || ||||||| Sbjct 406 TTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTC 347 Query 15261 CTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTA 15320 |||| || || ||||||| |||||| | || ||||||||||| ||| || || | Sbjct 346 CTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGA 287 Query 15321 AGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||||||| || | ||||| || || ||||||||| Sbjct 286 GCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 243 >seq11230 Length=416 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || |||||||||||||| ||||| || || ||||| || || | |||| | || Sbjct 297 TAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATC 238 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || ||| | ||||| | |||||||||| ||| || ||||||||||| Sbjct 237 TTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTC 178 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| || |||| || || ||| || || || || || || || Sbjct 177 TTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGT 118 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || ||||| || |||||||||||| Sbjct 117 TTTTCCGGTGAGCGTTTTCACGAAAATTTGCATA 84 >seq12829 Length=36573 Score = 109 bits (120), Expect = 4e-19 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| || || ||||| || | | | | | || |||| ||||| || || | | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATT 15292 ||||||| ||||| || ||||| |||||||| || |||||| || ||| ||| || Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTT-CTGTTTCACATTT 35365 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 ||||| | ||| | ||| || || || || || |||||||| || || ||||||||| Sbjct 35364 TCTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACA 35305 Query 15353 AAAATTTGCATATTTGAAAATAA 15375 || |||||| || ||||||||| Sbjct 35304 AAGATTTGC--ATCTGAAAATAA 35284 >seq11483 Length=76730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| ||||| || || | |||| | |||||||||||||| |||||| | | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATT 15292 |||| | || || || |||||| ||||| || || ||| || || ||| ||| | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTT-CTGTTTGACATTC 50919 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || | ||| | ||| || || | |||||| |||||||| || || ||||| || Sbjct 50918 TCAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACG 50859 Query 15353 AAAATTTGCAT 15363 ||||| ||||| Sbjct 50858 AAAATCTGCAT 50848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362122307193549