Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5713 107 1e-18 seq11905 102 5e-17 seq11230 93.3 3e-14 seq9555 89.7 3e-13 seq9601 87.8 1e-12 >seq5713 Length=114977 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | |||||||| || ||||| |||||||| ||||||||||| || Sbjct 41002 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGA 40943 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || |||||||| || ||| || || | ||||||||| || | ||| Sbjct 40942 AAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGG 40883 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| |||||| | | || || ||| | |||| || Sbjct 40882 AATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGAC 40823 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || || || ||||| || || | |||||| ||||| || ||||| ||| Sbjct 40822 TTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTT 40771 >seq11905 Length=336 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || || ||||||||||| | || || |||||||| || ||||| || Sbjct 86 ACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCT 145 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | ||| || | ||||||||| || || || | ||| ||||| | || Sbjct 146 CAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 205 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | | || ||| || ||| || |||||| || | Sbjct 206 GATACCTTCTTTGTCTTGGATTTTAGC---TTTGACGTTTTCGATTGTGTCGGACGGCTC 262 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | ||||||||||||||| || |||||||| |||||||||||||| Sbjct 263 AACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq11230 Length=416 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || || ||||||||||| | || || ||||| || |||||||| ||| Sbjct 312 ACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACT 253 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || ||||| || ||||| || || || | ||| ||||| | || Sbjct 252 CAACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 193 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || ||| |||| | || ||| || |||||| || | Sbjct 192 GATGCCTTCTTTGTCTTGGATCTTAGCCT---TGACGTTTTCGATTGTGTCGGACGGCTC 136 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| ||||||||||| || || ||||| |||||||||||||| Sbjct 135 GACTTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq9555 Length=64705 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| || ||||| || ||| | | | Sbjct 29940 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 29881 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| ||||| || || || | ||| ||||| | || || |||||||| Sbjct 29880 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 29821 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || ||| |||||||| || | || |||| ||| Sbjct 29820 TCTTGGATCTTAGCCT---TGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTG 29764 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 29763 ATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTTTAT 29720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| || ||||| || ||| | | | Sbjct 30168 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 30109 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| ||||| || || || | ||| ||||| | || || |||||||| Sbjct 30108 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 30049 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || ||| |||||||| || | || |||| ||| Sbjct 30048 TCTTGGATCTTAGCCT---TGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTG 29992 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||||||||||||||| |||||||||||||| Sbjct 29991 ATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| || ||||| || ||| | | | Sbjct 30751 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 30692 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || || | ||| ||||| | || || |||||||| Sbjct 30691 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTG 30632 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || |||||| || | ||| || | |||| Sbjct 30631 TCTTGGATTTTAGC---TTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTT 30575 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || |||||||| |||||||||||||| Sbjct 30574 ATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || || ||||| || ||||| ||| ||| | Sbjct 30979 CGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCA 30920 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || ||||| || || || | ||| ||||| | || ||||||||||| Sbjct 30919 TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTG 30860 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || ||| || |||||| || | || |||| ||| Sbjct 30859 TCTTGGATCTTAGCCT---TGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTG 30803 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || || ||||| |||||||||||||| Sbjct 30802 ATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq9601 Length=294 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| || ||||| || ||| | | | Sbjct 57 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 116 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || || | ||| ||||| | || || |||||||| Sbjct 117 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTG 176 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || |||||| || | ||| || | |||| Sbjct 177 TCTTGGATTTTAGC---TTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTT 233 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || |||||||| |||||||||||||| Sbjct 234 ATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318727524920322