Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq12829 118 8e-22 seq5713 114 9e-21 seq4379 114 9e-21 seq11905 96.9 2e-15 seq11483 91.5 1e-13 seq11230 91.5 1e-13 >seq12829 Length=36573 Score = 118 bits (130), Expect = 8e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 ||||||||||||||||||| ||| |||| |||| || | |||||||| ||||| | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| || || || || |||| | |||||||||||| |||||| ||||| || | Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTT 35364 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | | ||| | || || || || | || |||||||||||||| | || || |||| Sbjct 35363 CTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAA 35304 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 35303 AGATTTGCAT 35294 >seq5713 Length=114977 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||| | |||||||||| || ||||||||||||||||||||| Sbjct 41458 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 41399 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || | |||||| || || || || | |||||||| || | || Sbjct 41398 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41339 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| |||||| ||| || | | | ||||| || || || Sbjct 41338 AATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 41279 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| |||||| |||||||| ||||| || || || || |||||||| Sbjct 41278 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||| | |||||||||| || |||||||| ||||| |||||| Sbjct 41002 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGA 40943 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| ||||||||||| || || || || | |||||||| || | || Sbjct 40942 AAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGG 40883 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| |||||| ||| || | | | ||||| || || || Sbjct 40882 AATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGAC 40823 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||| || |||||||| || ||||| || || || || ||||| Sbjct 40822 TTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 40775 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||| | |||||||||| || || ||||| |||||||||||| Sbjct 41230 ACCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGA 41171 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || | |||||| || || || || | |||||||| || | || Sbjct 41170 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41111 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| |||||| ||| || | ||| ||||| || || || Sbjct 41110 AATTCCCTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGAC 41051 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| |||||| |||||||| || ||||| || || || || ||||| Sbjct 41050 TTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||| |||||||| || || ||| |||||||| ||||||||||| | | | Sbjct 41674 TCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCC 41615 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 || || |||||||| || || || || | ||||| || || | || | ||||| || Sbjct 41614 GTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTT 41555 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| |||||| ||| || | | | ||||| || || || |||| |||||| Sbjct 41554 ATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAAT 41495 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| ||||| || || || || |||||||| Sbjct 41494 AGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||| | |||||||||| || ||||||||||||||||||||| Sbjct 243 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 184 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || | |||||| || || || || | |||||||| || | || Sbjct 183 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 124 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| |||||| ||| || | | | ||||| || || || Sbjct 123 AATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 64 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| |||||| |||||||| ||||| || || || || |||||||| Sbjct 63 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || || || || | |||||||| || | || | ||||| | Sbjct 400 CATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCT 341 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| |||||| ||| || | | | ||||| || || || |||| ||||| Sbjct 340 TATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTAA 281 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||||||| ||||| || || || || |||||||| Sbjct 280 TAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq11905 Length=336 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || ||| |||||||| || || || ||| | || | | || Sbjct 101 TAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTC 160 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | ||| ||||| || || ||||| | ||| ||||| | || | ||||||||| || Sbjct 161 TTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 220 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||| |||||| | | | || || | |||||| || || | || || || Sbjct 221 TTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGT 280 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | ||| ||||| || |||||||| Sbjct 281 TTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq11483 Length=76730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||| ||||| || || | |||| || ||||||||||| || || | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| | ||||| ||| | || | |||||| ||||| ||| || |||||||| | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| | || | || || || |||| |||||||||||||| || | || ||||| | Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 44112 ATATTTGCAT 44121 | || ||||| Sbjct 50857 AAATCTGCAT 50848 >seq11230 Length=416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || ||| ||||| |||||||| || || | || | |||| Sbjct 297 TAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATC 238 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| |||||||| || || ||||| | ||| ||||| | || | |||||||| || Sbjct 237 TTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTC 178 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | || || ||||| | | | || || | |||||| || || | || || || Sbjct 177 TTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGT 118 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | || ||||| || |||||||| Sbjct 117 TTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354721869871572