Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq5713 111 1e-19 seq4379 104 2e-17 >seq5713 Length=114977 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | | |||||||||| || ||||||||||| || ||||||||| Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||||||||| || || | || || | || ||||| ||| Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || |||||| ||| || | | | | ||||| ||||| | Sbjct 40881 ATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACT 40822 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAttttt 20212 || | || |||||||| || ||||| |||||||| || || ||||||||| Sbjct 40821 TCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTT 40771 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | | |||||||||| || ||||||||||| || || |||||| Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| | ||||||||| || | || || | || ||||| ||| Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| |||||| | | | | ||||| ||||| | Sbjct 41337 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACT 41278 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAt 20208 || | ||||| ||||| || || || |||||||| || |||||||| Sbjct 41277 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||||||||| || ||||| ||||||||||| || || ||||| | |||| | Sbjct 41673 CTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCG 41614 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| |||||||| || || | || || | |||||||| ||| | ||||| || Sbjct 41613 TCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTA 41554 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || |||||| |||||| | | | | ||||| ||||| ||| | ||||| Sbjct 41553 TCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATA 41494 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAt 20208 ||||| || || || |||||||| || |||||||| Sbjct 41493 GTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | | |||||||||| || ||||||||||| || || |||||| Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| | ||||||||| || | || || | || ||||| ||| Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| |||||| | | | | ||||| ||||| | Sbjct 122 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACT 63 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAt 20208 || | ||||| ||||| || || || |||||||| || |||||||| Sbjct 62 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419521289275809