Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5251 122 7e-23 >seq5251 Length=56147 Score = 122 bits (134), Expect = 7e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| |||||||||||| |||||||| || ||||| | ||||||||| || |||||| Sbjct 14868 ATATACGTATCTATCAATTTACTATACATCTCAGAATGTACATTTTCCATGGCGATTTGG 14927 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 || ||||| ||| |||| || || | || || ||||| || | ||| | ||| | || Sbjct 14928 AATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAA-CGTTCAACCAA 14986 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||| ||||| || || || ||| || |||||||| || | ||||| |||||||| Sbjct 14987 GTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTG 15046 Query 13600 tttttC 13605 |||||| Sbjct 15047 TTTTTC 15052 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTT 12861 ||||||||| ||| | |||||||| || ||| ||||||||| || | Sbjct 14032 TTAAAAATCCGCATCCAATTTAAATACATTTTCCACCTCCGGTGACATAACTCCGCTTCT 14091 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 | |||||| | ||||||||||||||||||||| ||||| || | || || || |||| Sbjct 14092 CTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCATTCAATGATATTATTTC 14151 Query 12922 CATAAAATCGAAAGGATT 12939 ||||||||| || ||||| Sbjct 14152 CATAAAATCAAACGGATT 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430914699264378