Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5713 199 9e-46 seq4379 199 9e-46 seq12829 149 1e-30 seq11483 149 1e-30 seq5251 145 2e-29 seq9555 109 1e-18 seq11230 107 4e-18 seq8209 102 2e-16 seq625 95.1 3e-14 >seq5713 Length=114977 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||||| | |||||| || |||||||| ||||||||||| || Sbjct 41460 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCG 41401 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || |||||||||||||| || || || || || | || ||||| || Sbjct 41400 GAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 41341 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| ||||| || | ||||||||| ||||| Sbjct 41340 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCG 41281 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| |||||||| | |||||| || || || ||||| Sbjct 41280 ACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | |||||| | |||||| || ||||| || || |||||||| || Sbjct 41232 ATACCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCG 41173 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || |||||||||||||| || || || || || | || ||||| || Sbjct 41172 GAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 41113 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| |||||||| ||||| || ||||| || ||||| | ||||||||| ||||| Sbjct 41112 GGAATTCCCTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCG 41053 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| |||||||| | ||||| || || |||||||| Sbjct 41052 ACTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 181 bits (200), Expect = 2e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||||| | |||||| || |||||||| || ||||| || || Sbjct 41004 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCG 40945 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| | |||||| ||||| || || || | || ||||| || Sbjct 40944 GAAAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGG 40885 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| ||||| || ||||||||||| || | ||||||||| ||||| Sbjct 40884 GGAATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCG 40825 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || || |||||||| | ||||| || || ||||||||||| Sbjct 40824 ACTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 >seq4379 Length=409 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||||| | |||||| || |||||||| ||||||||||| || Sbjct 245 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCG 186 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || |||||||||||||| || || || || || | || ||||| || Sbjct 185 GAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 126 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| ||||| || | ||||||||| ||||| Sbjct 125 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCG 66 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| |||||||| | |||||| || || || ||||| Sbjct 65 ACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Score = 143 bits (158), Expect = 6e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 ||||| || ||||| | |||||| ||||| || || || | || ||||| || || ||| Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||| ||||| || ||||||||||| || | ||||||||| ||||| || || Sbjct 347 CCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCG 288 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| |||||||| | |||||| || || || ||||| Sbjct 287 AGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq12829 Length=36573 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||||||||| || |||| ||| | || || ||||| |||||||| ||||||| Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | ||||||||| ||||| || ||||||||||| ||||| || ||| ||||||| Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTT 35364 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 ||| | ||| |||||| || || | || || || ||||| || || |||||||||| Sbjct 35363 CTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAA 35304 Query 104550 ATATCTGCAT 104559 | || ||||| Sbjct 35303 AGATTTGCAT 35294 >seq11483 Length=76730 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| |||||||| || | ||||| || ||||||| |||||||||||| || | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | ||||| ||||| || || || ||||| |||||||||||||| ||| ||||| | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | | ||| |||||| || || || ||||| || ||||| || |||||||| || | Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 50857 AAATCTGCAT 50848 >seq5251 Length=56147 Score = 145 bits (160), Expect = 2e-29 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 268796 TATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATT 268855 || || || | ||||||| ||| | | ||||||||||||| | |||||| || | || Sbjct 15088 TAGGATTTCAGAGATTGGGAAAGTCTGAAACCAGAAGAAAAACAATTTATTTCCCACATC 15029 Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 | || |||||||||| |||||| || || ||||| || | || || ||| | Sbjct 15028 TTAGCCTTTTTTGCAGCCTCTGATGGCATTGTCAACGAGAACTTGGTTGAACGTTTCAAT 14969 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || || || | |||||||||| ||| || |||||||| || || || |||||| Sbjct 14968 CAAGAAGTGCAAGTTACCGAAGCCAGATTTTTCTATGGATTCCAAATCGCCATGGAAAAT 14909 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAG 269035 | ||||| |||||||| ||| ||| |||||||| |||||| | ||| | | |||||| Sbjct 14908 GTACATTCTGAGATGTATAGTAAATTGATAGATACGTATATAAAGGATCCCCATGAAAAG 14849 Query 269036 AAA 269038 || Sbjct 14848 TAA 14846 Score = 131 bits (144), Expect = 4e-25 Identities = 139/183 (76%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT---AGCGCGCCTTAC 269125 ||||| | ||||| | || |||||| ||| |||||| ||| | || ||| Sbjct 14745 TGTGTTAAGAAAAAGGCAGATTGGGCTTTGAGATGGATTGCTGATGAAAAAGCTACTTTT 14686 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | ||||| ||||| ||||| |||||||| || ||||| || |||||| Sbjct 14685 GGCGAAAGAATCGTTGCATTTGCAGCTGTTGAAGGTATCTTTTTTTCCGGTAGTTTTGCT 14626 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || |||||| ||||||||||||| || ||||| |||||||||||| |||||||||| Sbjct 14625 GCAATATTTTGGCTGAAGAAAAGAGGTCTAATGCCCGGATTAACTTTCAGTAACGAATTG 14566 Query 269246 ATA 269248 ||| Sbjct 14565 ATA 14563 >seq9555 Length=64705 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| || | || |||||||| || || || ||||| | ||||| |||||||| Sbjct 29935 TACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 29876 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||||||||| || || || | || ||||| || || || || |||||||| || || Sbjct 29875 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 29816 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || || || ||||| | || || || || || || | || || || || Sbjct 29815 GATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTT 29756 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||| || || |||||||| || Sbjct 29755 TCCCGTAAGAGTTTTCACGAAGATCTGCATGTT 29723 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| || | || |||||||| || || || ||||| | ||||| |||||||| Sbjct 30163 TACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 30104 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||||||||| || || || | || ||||| || || || || |||||||| || || Sbjct 30103 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 30044 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || || || ||||| | || || || || || || | || || || || Sbjct 30043 GATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTT 29984 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || ||||| Sbjct 29983 TCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 >seq11230 Length=416 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||||||||| |||||| | ||||| || ||||| | |||||||| Sbjct 281 GTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATCTTCCAACTGTTTTCCG 222 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || ||||| || || || || |||||||| || || ||||| || || Sbjct 221 GCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTAGCCTTG 162 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || ||| || || || || | || || || || || || || ||| Sbjct 161 ACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCGGTGAGCGTT 102 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 101 TTCACGAAAATTTGCAT 85 >seq8209 Length=47891 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| || |||||||| ||||| |||||||| | ||||||||| ||||| ||||| Sbjct 18919 CCTTCTTTGTCTTGAATCTTAGCTTTCACATTTTCAATGGTATCGCTGGGTTCGACCTCG 18860 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| || || || || || || ||||| Sbjct 18859 AGAGTGATGGTCTTACCAGTTAGAGTCTTGACGAAAATTTGCAT 18816 >seq625 Length=71657 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 238558 AACAGCTCGA-GAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATG 238616 |||||||||| || ||| ||||||| || |||||||| | ||||| | |||||| Sbjct 54278 AACAGCTCGAAGAAAGCA-AAACTCATGACTTATTATGGAATGCTGCCCAAAAGCAAATG 54220 Query 238617 GTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676 || ||||||||||||| | || ||||||||||||||||| || || ||| | ||| Sbjct 54219 GTGCTTGAAGGCAAAATGCATGGATTTTTACGAATGTATTGGGCAAAGAAAATATTAGAA 54160 Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATAT-AGTATTTATCTGAACGATAAATAC 238733 ||||| | |||| | |||| ||||| || ||||||| | || || |||||| Sbjct 54159 TGGACCCAAAGTCCAGAACAAGC-GTTAGAAATCTCTATTTATTTAAATGACAAATAC 54103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151208257708412