Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq908 127 2e-24 seq6746 107 2e-18 seq11349 105 8e-18 >seq908 Length=107432 Score = 127 bits (140), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 164501 TAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACAT 164560 |||| |||||||| | ||||| |||||||| | |||||||| ||| |||||||||| Sbjct 56790 TAGGATGTAAACACGTTAAAGGTATTTTATTGTACGGACCTCCGGGTACTGGTAAAACAT 56731 Query 164561 TAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGCGA---CCCGTTAAAATTGTTAATG 164617 | |||||||| |||| | || || || | ||| ||| || || || |||| Sbjct 56730 TGATGGCTCGTCAAATTGGTAAAATGTTGAATGCACGAGAACCC---AAGATAGTGAATG 56674 Query 164618 GTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTC 164677 ||||| || ||||| | |||||||| ||||| |||||||| ||| || | |||||| Sbjct 56673 GTCCTCAAATATTGGATAAATATGTCGGTGAATCAGAAGCAAATATTCGCCGATTGTTTG 56614 Query 164678 AGGAGGCTGAAGAAGAACAAAA 164699 ||| |||||||||||| |||| Sbjct 56613 CGGATGCTGAAGAAGAAGAAAA 56592 >seq6746 Length=106662 Score = 107 bits (118), Expect = 2e-18 Identities = 235/341 (69%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 ||||| || | ||| || | || | ||| |||| ||| ||||||||||||| ||| Sbjct 3799 TGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACACCTAGACCC 3858 Query 6958 ATATCTGCTGATCTTTGATAACATT-GACAAGATAA---AATATTGTCTATAGCATAAAA 7013 ||||| || || | |||||| ||| |||| || | | ||| ||| ||||||| Sbjct 3859 ATATCAGCAGAGCGTTGATA-CATGAGACACGAAAGCTCACCATTAGCTA---CATAAAA 3914 Query 7014 TTGACACAATACA-TGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAG 7072 ||| ||| | || ||||| |||||||| | | | || |||| |||||||| | Sbjct 3915 TTG-CACTAAGCAATGACACGGAGGTAATGCCATTTTAGGTAAATCAACAGGATTCCAGG 3973 Query 7073 CAGTCATTAAA--ATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG 7130 || ||| ||| || | |||||| || ||||| ||||| | | |||| || |||| Sbjct 3974 CA--CATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATATTTTG 4031 Query 7131 TAATTGATCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTAGCTCCAA 7189 |||||||| | || || || |||| | ||| || | | || | ||||||| Sbjct 4032 CAATTGATCAACGCCTTGGCCAGTGTAATCGGCGA-ACATATCTTTGTACTCGGCTCCAA 4090 Query 7190 AATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 |||| ||||| || || |||||||||||||| | ||| ||| Sbjct 4091 AATGCCTCCACTGGAATCCATAAATAGGACCGAGATCCCCT 4131 >seq11349 Length=21738 Score = 105 bits (116), Expect = 8e-18 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 164501 TAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACAT 164560 |||| | ||||| | | ||| |||||||| | |||||||| ||| |||||||||| Sbjct 1049 TAGGATTGAAACACGTTAGAGGTATTTTATTGTACGGACCTCCGGGTACTGGTAAAACAT 990 Query 164561 TAATGGCTCGATGCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGG 164618 | |||||||| |||| | || || || ||| || || || || || ||||| Sbjct 989 TGATGGCTCGTCAAATTGGTAAAATGTTGAATGCTCGAGAACCC--AAGATAGTGAATGG 932 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 |||| | ||||| | |||||||| ||||| || ||||| ||| || | |||||| Sbjct 931 TCCTCAGATATTGGATAAATATGTCGGTGAATCTGAAGCAAATATTCGCCGATTGTTTGC 872 Query 164679 GGAGGCTGAAGAAGAACAAAA 164699 ||| |||||||||||| |||| Sbjct 871 GGATGCTGAAGAAGAAGAAAA 851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595775997572400