Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7611 197 2e-46 seq11725 174 2e-39 seq7300 143 4e-30 seq5796 136 6e-28 >seq7611 Length=116089 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||||| ||||| ||||||||||| || || ||||||||| Sbjct 49985 GCCAAGCGTCATCGTAAAGTACTTCGTGATAATATCCAAGGAATTACTAAACCAGCTATC 50044 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | |||||||||||||| ||| | |||||||| | |||||||| | | Sbjct 50045 CGTCGTTTAGCAAGACGTGGTGGAGTCAAACGTATATCTGGATTAATTTATGAAGAAACT 50104 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||| | | | |||||| | ||||||| | ||| || || Sbjct 50105 CGTGGAGTATTGAAGGTGTTCTTGGAAAACGTTATTCGTGATGCTGTAACCTACACTGAA 50164 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | || || || || | ||||| |||| ||||| || |||||||||||| Sbjct 50165 CACGCCAAAAGGAAAACCGTTACAGCTATGGACGTCGTTTATGCGTTAAAACGTCAAGGC 50224 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | |||||||||||||| ||||| Sbjct 50225 AGAACTCTTTATGGTTTTGGAGGTTAA 50251 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 45048 CGCCAAACGTCATCGTAAAGTACTTCGTGATAATATCCAAGGAATTACCAAACCAGCTAT 45107 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | ||| | ||||| |||||||| ||| | ||||| | | || ||||| | Sbjct 45108 CCGTCGTTTAGCTAGACGTGGAGGAGTCAAACGTATTTCTGGTCTAATTTACGAAGAAAC 45167 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | ||| | | | ||| || | ||||||| | || || || Sbjct 45168 TCGTGGAGTACTGAAAGTTTTCTTGGAAAACGTCATTCGTGATGCTGTAACATACACGGA 45227 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| | || ||||| ||| |||||||| | || ||||| |||||||||||||| Sbjct 45228 ACATGCTAAGAGGAAAACTGTAACCGCCATGGATGTGGTATATGCTTTGAAACGTCAAGG 45287 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | |||||||||| ||| ||||| Sbjct 45288 TAGAACCCTTTATGGTTTCGGAGGTTAA 45315 >seq11725 Length=34593 Score = 174 bits (192), Expect = 2e-39 Identities = 200/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||| ||||||||||||||||| Sbjct 30330 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATCACCAAGCCAGCTAT 30271 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||| | ||||| || || || ||| | ||||| ||| |||| ||||| | Sbjct 30270 CCGTCGTCTTGCTAGACGTGGAGGTGTGAAACGTATATCTGGGTTGATCTACGAAGAAAC 30211 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||| | || || | | ||| |||| ||| || | || || || Sbjct 30210 CCGTGGTGTCCTGAAAGTATTTCTTGAAAACGTCATCCGTGACGCAGTTACTTACACGGA 30151 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || || || || ||||||| | || ||||| |||||||||||||| Sbjct 30150 ACACGCGAAAAGGAAAACCGTTACTGCCATGGACGTTGTATATGCTTTGAAACGTCAAGG 30091 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | |||||||||||| |||||| Sbjct 30090 TAGAACTCTGTATGGTTTTGGAGGTTAAT 30062 >seq7300 Length=104856 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | || ||||||||||| || |||||||| || || ||| Sbjct 43552 GCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAGGGTATCACCAAACCTGCCATC 43611 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | ||||| || || || ||| |||| || ||| |||||||||| | | Sbjct 43612 CGTCGTCTCGCCAGACGTGGAGGTGTGAAACGTATCTCCGGTTTGATCTATGAAGAAACT 43671 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || || || | || | | | || |||| |||||| | || || || Sbjct 43672 CGTGGAGTATTAAAAGTATTTTTGGAAAATGTAATCCGAGATGCTGTTACTTACACTGAA 43731 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | || || || || | |||||| | || ||||| |||||||||||||| Sbjct 43732 CACGCCAAAAGGAAAACCGTTACTGCTATGGATGTTGTATATGCCTTGAAACGTCAAGGA 43791 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 43792 AGAACTCTGTACGGTTTTGGAGGTTAA 43818 >seq5796 Length=20841 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| |||||||| || || || ||||| ||||||||| | || | ||||||||| Sbjct 3020 CGTGATAATATCCAAGGTATTACGAAACCAGCCATCCGTCGTTTAGCCAGACGTGGTGGA 2961 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| | || |||||| |||||||||| | ||||| || ||||| | || | Sbjct 2960 GTGAAACGTATATCAGGATTGATCTATGAAGAAACTCGTGGCGTGTTGAAAGTATTTTTG 2901 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||||| ||||||| | ||||| || ||||| || | || || || || Sbjct 2900 GAAAACGTTATCCGTGATGCTGTTACTTATACAGAACACGCCAAGAGGAAAACCGTTACT 2841 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || || || ||||| | ||||| | | | |||||||| ||| || Sbjct 2840 GCTATGGATGTAGTATACGCTTTGAAGAGGCAAGGAAGAACTTTGTATGGTTTCGGAGGT 2781 Query 16697 TAA 16699 ||| Sbjct 2780 TAA 2778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063415497077