Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5251 116 4e-21 >seq5251 Length=56147 Score = 116 bits (128), Expect = 4e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 21488 CAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAAT 21547 |||| || |||| |||| || ||| ||||| ||| || ||||| |||||||||| Sbjct 14542 CAAT-CATACCT-CATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGA 14599 Query 21548 CCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACG 21607 ||||| || || | ||||||||||| ||||| || ||||| || || || ||||| Sbjct 14600 CCTCTTTTCTTCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACA 14659 Query 21608 GCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCT 21667 || ||||||||||| | || ||| || | |||| || || ||| |||||| | Sbjct 14660 GCTGCAAATGCAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAA 14719 Query 21668 GCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 ||||| | |||||||| |||| ||| ||||| ||||| || || || || Sbjct 14720 GCCCAATCTGCCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| ||| || ||||| || | | |||||||| ||| || | Sbjct 14032 TTAAAAATCCGCATCCAATTTAAATACATTTTCCACCTCCGGTGACATAACTCCGCTTCT 14091 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 | ||| |||| |||||||||||| ||||| || || || || | ||||||||| ||| Sbjct 14092 CTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCATTCAATGATATTATTTC 14151 Query 21247 CATAAAATCAAATGGATT 21264 |||||||||||| ||||| Sbjct 14152 CATAAAATCAAACGGATT 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531815104132360