Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6746 123 6e-23 >seq6746 Length=106662 Score = 123 bits (136), Expect = 6e-23 Identities = 236/344 (69%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||| |||||||| || |||| ||||| || ||| | || ||||| || || |||||| Sbjct 4131 AGGGGATCTCGGTCCTATTTATGGATTCCAGTGGAGGCATTTTGGAGCCGAGTACAAAGA 4072 Query 111548 CATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAAT 111607 ||| || | || | || || ||||||||| || ||| | || || || Sbjct 4071 TATGTTCGCCGATTACACTGGCCAAGGCGTTGATCAATTGCAAAATATAATAAATATGAT 4012 Query 111608 TAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGA 111667 || | ||| || | | | | || ||| | |||| ||||| || || || Sbjct 4011 CAAAACCAATCCTAACGATAGAAGAATGATTTTATGTGCCTGGAATCCTGTTGATTTACC 3952 Query 111668 AAAAATGGCACTTCCACCATGTCAT--CTTATGTGCCAGTTTTATGTACACGACGGGATG 111725 ||||||||| | || || |||||| |||| |||| | ||||||||| | || | Sbjct 3951 TAAAATGGCATTACCTCCGTGTCATTGCTTA-GTGCAA-TTTTATGTAGCTAATGGTGAG 3894 Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 ||||| || | |||||||| || ||||||||||| ||||| ||||| || || ||||| Sbjct 3893 CTTTCGTGTCTCATGTATCAACGCTCTGCTGATATGGGTCTAGGTGTACCTTTCAATATA 3834 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829 ||||||||| | | || |||| | ||||||||| ||||||| Sbjct 3833 GCAAGTTACTCCTTGCTCACTTATATGATCGCTCATATTACAAA 3790 Score = 87.8 bits (96), Expect = 5e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 364121 TATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAG 364180 ||||||||||||| |||| |||||||| ||||||||||| || |||||| |||| |||| Sbjct 29820 TATGGTTTGCCATATTGGACTCGCAGATAGAGACAGGAACTCCATATATGCTGTATAAAG 29879 Query 364181 ATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTA 364239 || | || || || || ||||| | | |||||||| | ||| || ||||| | Sbjct 29880 ATGCCTGTAATATGAAATCTAACCAAAAAAATCTTGGTACCA-TCAAAAGCAGCAATTTG 29938 Query 364240 TGTACCGAGATTATTGAATA 364259 ||||| || || | ||||| Sbjct 29939 TGTACTGAAATCGTCGAATA 29958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303138363779198