Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq9555 102 7e-17 seq11230 87.8 1e-12 >seq9555 Length=64705 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || ||||| |||||||| ||||||||||| | Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || ||||| ||||| || || | || | | |||||||| || Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | |||||| ||||| Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGC--CTTGACGTTTTCGATTGTGTCGGACGGCTCGA 30814 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 30813 CTTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq11230 Length=416 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | | |||| ||| || ||||| || || || || |||||||| | Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || ||||| ||||| || || | || | | |||||||| || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | |||||| ||||| Sbjct 191 ATGCCTTCTTTGTCTTGGATCTTAGC--CTTGACGTTTTCGATTGTGTCGGACGGCTCGA 134 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 133 CTTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405024366878110