Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6746 136 5e-27 seq5251 123 3e-23 >seq6746 Length=106662 Score = 136 bits (150), Expect = 5e-27 Identities = 210/297 (71%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCAT 63081 ||||| || |||| |||||||| | |||| | || | | |||| | ||| |||| Sbjct 29662 CCAGGGCAGTCATTTGGACACATAAGACTCCACGTTTGGTTA-CTTTCAACACGTCTCAT 29604 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 || ||||||||||| ||||| ||||||| |||||| ||||| || ||||| || Sbjct 29603 GAATTCGTCAGGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTTACC 29544 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 | |||| | | || | ||| | | |||||| | |||||| ||||| || || || Sbjct 29543 GGAATTCATCCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATAGAT 29484 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 ||| | | | || || | |||||| ||||| ||||| | |||||| || |||| ||| || Sbjct 29483 GGCGAAAGCGCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATTGTA 29424 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 ||| | ||| |||| || |||||| ||| ||||| || || || ||||| || Sbjct 29423 GACTTGAAGCATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATAACT 29367 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 ||||| ||||| || || || | ||| | | |||| |||||| || || ||||| ||| Sbjct 31158 TAACTTGGATCGGCCATGTGAACATTTAAACTTTGAGATTGATCAATAAAAGCTCCTCTG 31099 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 || || |||||||| | | ||||||||| ||||||||||| |||||||||| Sbjct 31098 TCGGCGGCCATTTTCAACACAGTCTTTTGTTTAATTTCCCAAACGGTTTTATAAA 31044 >seq5251 Length=56147 Score = 123 bits (136), Expect = 3e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 32910 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 ||||||| ||| || | ||| ||||| ||||| ||||||||| || ||||| | Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 ||||| ||||| ||||| ||||| ||||| |||| || ||||||| || |||||| | Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089 || ||||| | || || || || || || || ||| |||||||||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 | || ||||| | |||||| |||||| | || | | |||||| ||| ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATC 15085 Score = 107 bits (118), Expect = 2e-18 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || |||||||| || || | |||||||||||| || | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || ||||| || || ||||| || || ||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGG 32859 ||| | ||| || ||| || || | |||| ||||| | ||||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 |||| || || ||||| |||||||| || || ||||| ||||| Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||||||||| || | | |||||||| || | |||||| ||||| || |||||||| Sbjct 14075 GACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCA 14134 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTG 32450 | |||||||| ||||||| ||||| || |||||| Sbjct 14135 TTCAATGATATTATTTCCATAAAATCAAACGGATTG 14170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 |||||||| ||||||||||| || || || |||| | |||| ||||||||||| | Sbjct 14293 AATCTATCAGCGACAAATTCAATGTACGTCGTCATTAAATCACTGTTCATTCCTATCATA 14352 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 ||||| | ||| ||| | |||||||||||| || ||| ||||| ||||| Sbjct 14353 GATACTGGTAAAGCTTTAGTCAAAAATTCTTGTTCTATTACGACAGCGTCACGAATAATT 14412 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 ||| | ||| |||| ||| | | |||| ||| |||||||| || |||||| Sbjct 14413 TCAGTTATTTCTTCAACACTAGGTTTCTGAACCAAATATTTGAACATCAAGCAAGCGAAA 14472 Query 32670 TCGCAGTGTAGACCCT 32685 || |||| ||||| Sbjct 14473 TCAGTATGTAAACCCT 14488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633529913964400