Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11230 131 1e-25 seq11905 127 2e-24 seq5713 127 2e-24 seq9601 125 6e-24 seq9555 125 6e-24 seq4379 125 6e-24 seq12829 118 9e-22 >seq11230 Length=416 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| ||| | ||||| | ||||| ||| |||| Sbjct 85 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 144 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 145 GACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAA 204 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| ||||| || ||||||| | || || | || |||||| Sbjct 205 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAAT 264 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||||||||| || ||||| ||| || | ||| | || || Sbjct 265 ATTCAGAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGG 311 >seq11905 Length=336 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| ||| | || || | ||||| ||| |||| Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || ||||||||||| || ||||| || Sbjct 253 GACACAATCGAAAACGTCA---AAGCTAAAATCCAA-GACAAAGAAGGTATCCCACCCGA 198 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || || ||||| || ||| | ||||| | | || || |||| || Sbjct 197 CCAACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTA 138 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||||||||| || ||||| ||| || | ||| | || || Sbjct 137 CAACATCCAAAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGG 87 >seq5713 Length=114977 Score = 127 bits (140), Expect = 2e-24 Identities = 171/235 (73%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| || || || || |||||||| |||||| ||||||| ||||||| || Sbjct 40770 GAAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAAC 40829 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | || || |||||| | || |||| |||| ||| || || ||||| ||||| | Sbjct 40830 CAAGCGATACCATCGAG--AATGTAAAAGCCAAAATTCAA-GATAAGGAAGGAATTCCCC 40886 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || || || || | || || || || |||||||| ||||||| | ||| | || Sbjct 40887 CAGATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCG 40946 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||||||||| || ||||||| || || | | |||||||| Sbjct 40947 ATTACAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || |||||| | || || ||||||| || | Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| |||| || |||| ||| || |||||||| ||||| || || || Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCCCCAGATCA 41349 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || |||||||||||| ||||||||| | ||| | |||||| || Sbjct 41350 GCAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAA 41409 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||| || ||||||| || || | | |||||||| Sbjct 41410 TATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41457 Score = 109 bits (120), Expect = 5e-19 Identities = 168/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || |||||| | || || ||||||| || | Sbjct 41459 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41518 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| |||| || |||| ||| || || ||||| ||||| || || || Sbjct 41519 GATACCATCGAGAACGTGAAAGCTAAAATTCAA-GATAAGGAAGGAATTCCCCCAGATCA 41577 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || |||||||||||||| | | ||| | ||||| || Sbjct 41578 ACAACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAA 41637 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTA 25234 ||| |||||||||||||| || || || ||| | || || | || || ||||| || Sbjct 41638 TATCCAAAAAGAATCCACACTGCACTTGGTGTTGAGACTTCGTGGTGGCAATTAGTA 41694 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| |||||| | || || ||||||| || | Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | |||| |||| ||| || ||||| || ||||| || || || Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAA-GATAAAGAGGGAATTCCCCCAGATCA 41121 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || |||||||||||| ||||||||| | ||| | |||||| || Sbjct 41122 GCAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAA 41181 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||||| || ||||||| || || | | |||||||| Sbjct 41182 TATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGG 41229 >seq9601 Length=294 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| ||| | || || | ||||| ||| |||| Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || |||||||||||||| ||||| || Sbjct 211 GACACAATCGAAAACGTCA---AAGCTAAAATCCAA-GACAAAGAAGGGATCCCACCCGA 156 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || || ||||| || ||| | ||||| | | || || |||| || Sbjct 155 CCAACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTA 96 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || |||||||||||||| || || ||||| Sbjct 95 CAACATCCAAAAAGAATCCACCCTTCACTTAGT 63 >seq9555 Length=64705 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| ||| | || || | ||||| ||| |||| Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || |||||||||||||| ||||| || Sbjct 30597 GACACAATCGAAAACGTCA---AAGCTAAAATCCAA-GACAAAGAAGGGATCCCACCCGA 30652 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || || ||||| || ||| | ||||| | | || || |||| || Sbjct 30653 CCAACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTA 30712 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || |||||||||||||| || || ||||| Sbjct 30713 CAACATCCAAAAAGAATCCACCCTTCACTTAGT 30745 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || ||| | ||||| | ||||| ||| |||| Sbjct 29954 ATGCAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCG 30013 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 30014 GACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 30073 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| |||||| | ||||| | | || || |||| ||||| Sbjct 30074 CAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 30133 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| || || ||||| Sbjct 30134 ATCCAAAAAGAATCCACCCTTCACTTAGT 30162 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | || || ||| | ||||| | ||||| ||| |||| Sbjct 29726 ATGCAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCG 29785 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 29786 GACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 29845 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| |||||| | ||||| | | || || |||| ||||| Sbjct 29846 CAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 29905 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| || || ||||| Sbjct 29906 ATCCAAAAAGAATCCACCCTTCACTTAGT 29934 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| ||| | ||||| | ||||| ||| |||| Sbjct 30765 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 30824 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 30825 GACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAA 30884 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| ||||| || ||||||| | || || | || ||||| Sbjct 30885 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAAC 30944 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| |||||||| || || || || Sbjct 30945 ATCCAAAAGGAATCCACCCTTCACTTGGT 30973 >seq4379 Length=409 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || |||||| | || || ||||||| || | Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| |||| || |||| ||| || |||||||| ||||| || || || Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCCCCAGATCA 134 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || |||||||||||| ||||||||| | ||| | |||||| || Sbjct 135 GCAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAA 194 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||| || ||||||| || || | | |||||||| Sbjct 195 TATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 242 >seq12829 Length=36573 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | ||||||||| | || || | ||||| || | ||| Sbjct 35294 ATGCAAATCTTTGTAAAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCT 35353 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || |||| || ||||| || |||||||||||||| || || ||| Sbjct 35354 GATTCAATAGAAAATGTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAA 35413 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||||||||| ||||| |||| |||| || ||| | ||||| ||| Sbjct 35414 CAGCGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAAT 35473 Query 25179 ATTCAAAAAG 25188 |||||||||| Sbjct 35474 ATTCAAAAAG 35483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433259930806535