Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5251 183 3e-41 seq4794 136 4e-27 seq11738 131 2e-25 seq6746 82.4 8e-11 >seq5251 Length=56147 Score = 183 bits (202), Expect = 3e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| ||||||||| || || ||||| ||||| || || | || |||| |||||| Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||||||||||| |||||||||||| |||||||| |||||||| || ||||||||||| Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCGGC 93294 || || | |||| ||||| | || | | | || |||||| | ||||||||||| || Sbjct 14672 ACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGC-AATCCATCTCAAAGCCCAATCTGC 14730 Query 93295 TTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 |||||||||| ||| || | |||||| || || || || ||| |||| Sbjct 14731 CTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAGGAAATC 14778 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 ||| || ||||| || || | |||||| |||||||| ||||| ||||| || ||||| Sbjct 14867 TATATACGTATCTATCAATTTACTATACATCTCAGAATGTACATTTTCCATGGCGATTTG 14926 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 |||||| |||||| |||| ||||| || | |||||||||||| || | || || | Sbjct 14927 GAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTGAAACGTTCAACCAA 14986 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 || || ||||| || ||||| || ||||||||||| || || || || ||||| || Sbjct 14987 GTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTG 15046 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||| || || ||| || | |||||||| Sbjct 15047 TTTTTCTTCTGGTTTCAGACTTTCCCAATC 15076 Score = 102 bits (112), Expect = 9e-17 Identities = 150/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 92907 TCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 ||||||| || |||||||||||| |||||||| |||||| | ||| ||||||| | Sbjct 14279 TCAACTCTAGCAGTAATCTATCAGCGACAAATTCAATGTACGTCGTCATTAAATCACTGT 14338 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 ||||||||| | | ||| |||| ||| | ||||| || |||| || ||||| || | Sbjct 14339 TCATTCCTATCATAGATACTGGTAAAGCTTTAGTCAAAAATTCTTGTTCTATTACGACAG 14398 Query 93027 CTTCTTTCAAGATTTC---TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGT 93083 | || | ||||| |||| || | | | ||||| || || | ||| ||| Sbjct 14399 CGTCACGAATAATTTCAGTTATTTCTTCAACACT---AGGTTTCTGAACCAAATATTTGA 14455 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 |||| ||||| || || || ||||||||||| Sbjct 14456 ACATCAAGCAAGCGAAATCAGTATGTAAACC 14486 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 ||| || |||| | ||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 15149 CTTATGCAAGA-CTACTTCTTCGACAGTCCAAAACGAGGCTTCAGCTTTTTTATACATGG 15207 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||| ||||| | ||||| ||| || | ||| Sbjct 15208 CCCAAATGTCATCATATTTAATAGGCAGTAT 15238 >seq4794 Length=85222 Score = 136 bits (150), Expect = 4e-27 Identities = 83/87 (95%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 38156 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 38097 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 38096 CGTGGGTTCGAACCCCACACCTGACAA 38070 >seq11738 Length=53249 Score = 131 bits (144), Expect = 2e-25 Identities = 80/84 (95%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 16657 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 16598 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 16597 TGGGTTCGAACCCCACACCTGACA 16574 >seq6746 Length=106662 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93127 TATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATAT 93186 |||||| ||||| || || ||||| || || | | ||| || || ||||||||||| Sbjct 25735 TATCAATTCATTACTTAAAGTTAATCCGGGCATTACGCCTTTTTCCTGTAGCCAAAATAT 25676 Query 93187 TGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 || |||| || ||||| ||||| |||||||| |||| |||||| || |||| Sbjct 25675 TGCAGCAGCACCACCAGCGAAAAAGATACCTTCAACGGTTGCAAACGCTACAA 25623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556771082764360