Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq5713 132 4e-26 seq4379 120 3e-22 seq11230 95.1 1e-14 seq12829 82.4 6e-11 >seq5713 Length=114977 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| | || || ||||| ||||| | ||| ||||||||| Sbjct 41459 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41518 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| |||||| || || ||||| ||||| |||||| Sbjct 41519 GATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAA 41578 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | || || |||||||| ||||| | |||| | | ||||||||| Sbjct 41579 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAAT 41638 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAAT 111417 || ||||||||||| ||||| || || |||||| | || || ||||||||| Sbjct 41639 ATCCAAAAAGAATCCACACTGCACTTGGTGTTGAGACTTCGTGGTGGCAAT 41689 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || || |||||||| |||| || |||||||| || | ||| ||||| Sbjct 40771 AAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAACC 40830 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 |||||| | | | | |||||| |||||| || || ||||| ||||| || Sbjct 40831 AAGCGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGA 40890 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| ||| | || || | || || ||||||||||||||| | |||| | ||||||| Sbjct 40891 TCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATTA 40950 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGT 111395 ||||| ||||||||||| || ||||||| || Sbjct 40951 CAATATCCAAAAAGAATCGACTTTACATTTGGT 40983 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| | || || ||||| ||||| | ||| ||||||||| Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| |||||| || |||||||| ||||| ||||| Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 41350 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | || ||||||||| | |||||| | |||| | ||||||||||| Sbjct 41351 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41410 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || ||||||| || Sbjct 41411 ATTCAAAAAGAATCGACTTTACATTTGGT 41439 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| |||| || ||||| ||||| | ||| ||||||||| Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || ||||| || ||||| ||||| Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAG 41122 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | || ||||||||| | |||||| | |||| | ||||||||||| Sbjct 41123 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41182 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||| ||||| || ||||||| || Sbjct 41183 ATCCAAAAGGAATCGACTTTACATTTGGT 41211 >seq4379 Length=409 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| | || || ||||| ||||| | ||| ||||||||| Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| |||||| || |||||||| ||||| ||||| Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 135 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | || ||||||||| | |||||| | |||| | ||||||||||| Sbjct 136 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 195 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || ||||||| || Sbjct 196 ATTCAAAAAGAATCGACTTTACATTTGGT 224 >seq11230 Length=416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || |||||| | ||||| ||||| || || ||||| || || | Sbjct 85 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 144 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || || || || |||||||||||| | || ||| ||| Sbjct 145 GACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAA 204 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || ||||| ||||||||| | ||| || || || ||| Sbjct 205 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAAT 264 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| || || ||||| ||||| ||||| || ||||| Sbjct 265 ATTCAGAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGG 311 >seq12829 Length=36573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| |||||| | ||||| ||||| || || ||||| ||||| Sbjct 35294 ATGCAAATCTTTGTAAAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCT 35353 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||||| | | | || ||||| |||||| || |||||||| |||| |||||| Sbjct 35354 GATTCAATAGAAAATGTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAA 35413 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| || ||||| | || ||| ||| | | ||||||||| Sbjct 35414 CAGCGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAAT 35473 Query 111367 ATACAAAAAG 111376 || ||||||| Sbjct 35474 ATTCAAAAAG 35483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422973546893800