Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9555 206 5e-48 seq5713 185 2e-41 seq11230 179 7e-40 seq9601 176 8e-39 seq11905 167 4e-36 seq4379 152 9e-32 seq11483 136 7e-27 >seq9555 Length=64705 Score = 206 bits (228), Expect = 5e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||||||||||||| || ||||| || ||||||||||| || || Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || |||||||| ||||| || |||||||| || | |||||||||||||||||| Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| ||||||||| ||||| ||||| | | || ||| Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 30812 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| ||||| || || ||||| || ||||| Sbjct 30811 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct 29952 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 29893 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| | || || |||||||| || | |||||||||||||||||| Sbjct 29892 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 29833 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||| ||||||||| ||||| ||||| | | || ||| Sbjct 29832 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 29773 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||||||||| || || || ||||| |||||||| Sbjct 29772 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCAT 29726 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct 30180 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30121 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| | || || |||||||| || | |||||||||||||||||| Sbjct 30120 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30061 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||| ||||||||| ||||| ||||| | | || ||| Sbjct 30060 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 30001 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||||||||| || || || ||||| || ||||| Sbjct 30000 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| | ||||| |||||||| || | |||||||||||||||||| Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || || |||||| ||||| ||||| | | || ||| Sbjct 30643 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 30584 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || |||||||| ||||| || || ||||| || ||||| Sbjct 30583 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 >seq5713 Length=114977 Score = 185 bits (204), Expect = 2e-41 Identities = 183/234 (78%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 ||||| || || ||||| | ||| |||||||| || ||||| ||||||||||| |||||| Sbjct 41691 TAATTGCCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAA 41632 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || ||||| || || || |||||||| || || || ||||| ||||| | |||||| || Sbjct 41631 TCAGAGAGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCT 41572 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GA 68407 || ||||| |||||||| |||||||| || || || ||| ||||||||| || ||| | Sbjct 41571 GGGGGAATTCCTTCCTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATC-GCTGGG 41513 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | || || ||||| || || | || |||||||| || ||||| Sbjct 41512 TTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 167 bits (184), Expect = 4e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || || ||||||||||| || |||||||| || || || |||||||| Sbjct 40984 TACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTC 40925 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || || || || ||||| ||||| | ||| || || || ||||| |||||||| ||||| Sbjct 40924 CAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTG 40865 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || || || || ||||||||| || || ||| ||||| | ||||||||||| Sbjct 40864 AATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTT 40805 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 || || | || |||||||| ||||||||| | ||| Sbjct 40804 ACCAGTCAAAGTTTTGACGAAGATCTGCATTTTTCTA 40768 Score = 152 bits (168), Expect = 9e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || || |||||||| || |||||||||||||| || || |||||||| Sbjct 41440 TACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTC 41381 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || || || |||||||| ||||| | ||| || || || ||||| ||||| || ||||| Sbjct 41380 TAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTG 41321 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTT 68430 ||| || || || || ||||||||| || ||| | ||| ||||| | || || |||| Sbjct 41320 AATTTTAGCTTTCACATTCTCGATGGTATC-GCTGGGTTCGACTTCGAGCGTAATAGTTT 41262 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | || |||||||| || ||||| Sbjct 41261 TACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 143 bits (158), Expect = 5e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || || || |||||||| |||||||||||||| || || |||||||| Sbjct 41212 TACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTC 41153 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || || || |||||||| ||||| | ||| || || || ||||| || || || ||||| Sbjct 41152 TAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTG 41093 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTT 68430 ||| || || || ||| || ||||| || ||| | ||| ||||| | || || |||| Sbjct 41092 AATTTTGGCTTTAACGTTTTCAATGGTATC-GCTGGGTTCGACTTCGAGCGTAATAGTTT 41034 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | || || ||||| |||||||| Sbjct 41033 TACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 >seq11230 Length=416 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || || ||||| || || ||||| ||||| || || || || || Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || |||||||| ||||| || |||||||| || | |||||||||||||||||| Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| ||||||||| ||||| ||||| | | || ||| Sbjct 191 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 132 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| ||||| || || ||||| || ||||| Sbjct 131 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq9601 Length=294 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| | ||||| |||||||| || | |||||||||||||||||| Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || || |||||| ||||| ||||| | | || ||| Sbjct 165 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 224 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || |||||||| ||||| || || ||||| || ||||| Sbjct 225 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq11905 Length=336 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || || ||||| || || ||||| |||||||||||||| || ||| Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| | ||||| |||||||| || | |||||||||||||||||| Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || || |||||| ||||| ||||| | | || ||| Sbjct 207 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 266 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || |||||||| ||||| || || ||||| || ||||| Sbjct 267 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq4379 Length=409 Score = 152 bits (168), Expect = 9e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || || |||||||| || |||||||||||||| || || |||||||| Sbjct 225 TACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTC 166 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || || || |||||||| ||||| | ||| || || || ||||| ||||| || ||||| Sbjct 165 TAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTG 106 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTT 68430 ||| || || || || ||||||||| || ||| | ||| ||||| | || || |||| Sbjct 105 AATTTTAGCTTTCACATTCTCGATGGTATC-GCTGGGTTCGACTTCGAGCGTAATAGTTT 47 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | || |||||||| || ||||| Sbjct 46 TACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq11483 Length=76730 Score = 136 bits (150), Expect = 7e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| |||||||| || || | || || ||||||||||| || || || ||||| | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | ||| || || || |||||||| |||||||| || |||||||| ||||| || Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || | ||| | | ||| ||||| | ||| || ||||| |||||||| || || |||| Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 50857 AAATCTGCAT 50848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921473915111080