Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq6746 163 3e-35 >seq6746 Length=106662 Score = 163 bits (180), Expect = 3e-35 Identities = 239/338 (71%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302 |||| |||||| | ||||||||| | | ||| || || || || || ||||| || || Sbjct 3793 GTAATATGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACACCT 3852 Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362 | |||||| || | || | ||||||| |||| ||||||||||| | |||||||||| Sbjct 3853 AGACCCATATCAGCAGAGCGTTGATACATGAGACACGAAAGCTCACCATTAGCTACATAA 3912 Query 20363 AATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCAC 20422 ||||| ||| | ||||| || || | ||||| | || || | || ||||| Sbjct 3913 AATTGCACTAAGCAATGACACGGAGGTAATGCCATTTTAGGTAAATCAACAGGATTCCAG 3972 Query 20423 GCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGAC 20482 ||||| | ||| ||||||||||||| ||||| |||| || | || | || | | Sbjct 3973 GCACATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATATTTTGC 4032 Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542 ||||| |||| || ||||| || || || || | || |||| | || ||||| Sbjct 4033 AATTGATCAACGCCTTGGCCAGTGTAATCGGCGAACATATCTTTGTACTCGGCTCCAAAA 4092 Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 |||||||||||||| || |||| ||| || | |||||| Sbjct 4093 TGCCTCCACTGGAATCCATAAATAGGACCGAGATCCCC 4130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441301689324760