Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5713 181 2e-40 seq4379 163 7e-35 seq11905 140 8e-28 seq9601 140 8e-28 seq9555 140 8e-28 seq11483 122 2e-22 seq12829 114 3e-20 seq8209 107 5e-18 >seq5713 Length=114977 Score = 181 bits (200), Expect = 2e-40 Identities = 179/230 (78%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | || | ||| |||||||||||||||||| || | | Sbjct 41685 CCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAG 41626 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||||||||||||| || |||||||| ||||| |||||| |||||| Sbjct 41625 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGA---TCTGGG 41569 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||| || ||||| ||||||||||| || || | |||||| | ||| Sbjct 41568 GGAATTCCTTCCTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCG 41509 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || || || || || | || |||||||| || ||||| Sbjct 41508 ACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 176 bits (194), Expect = 1e-38 Identities = 171/219 (78%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 || |||||| | ||| | || ||| |||||||||||||| |||| ||| || | ||| Sbjct 41218 TCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCC 41159 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTC 288374 ||||||| |||||| || |||||||| ||||| || ||| |||||| ||||| || Sbjct 41158 ATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGA---TCTGGGGGAATTCCCTC 41102 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 |||||| || ||||| ||||| |||||||| || | |||||| | ||| ||||||||||| Sbjct 41101 TTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGT 41042 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||| ||| || ||||| |||||||| Sbjct 41041 AATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 170 bits (188), Expect = 5e-37 Identities = 156/196 (80%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| || |||| || || | ||| ||||| |||||||| || ||||| Sbjct 40966 TTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAA 40907 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || ||| |||||| |||||||| ||||| || ||||| ||||| || Sbjct 40906 GATGAGACGTTGCTGA---TCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCTTTTAC 40850 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||||| | ||| |||||||||||||| || || || |||| ||| || Sbjct 40849 ATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTT 40790 Query 288459 GACGAATATCTGCATT 288474 |||||| ||||||||| Sbjct 40789 GACGAAGATCTGCATT 40774 Score = 163 bits (180), Expect = 7e-35 Identities = 154/195 (79%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| |||| ||| || | ||| ||||||| |||||| || ||||| Sbjct 41422 TTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAA 41363 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || ||| |||||| |||||||||||||| || ||||| |||||||| Sbjct 41362 GATGAGACGTTGCTGA---TCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCAC 41306 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||||| | ||| ||||||||||| || || || || || | || || Sbjct 41305 ATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTT 41246 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 41245 GACGAAGATTTGCAT 41231 >seq4379 Length=409 Score = 163 bits (180), Expect = 7e-35 Identities = 154/195 (79%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| |||| ||| || | ||| ||||||| |||||| || ||||| Sbjct 207 TTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAA 148 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || ||| |||||| |||||||||||||| || ||||| |||||||| Sbjct 147 GATGAGACGTTGCTGA---TCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCAC 91 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||||| | ||| ||||||||||| || || || || || | || || Sbjct 90 ATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTT 31 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 30 GACGAAGATTTGCAT 16 Score = 122 bits (134), Expect = 2e-22 Identities = 125/162 (77%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCC 288371 ||| ||||| |||||||| || |||||||| ||||| || ||| |||||| ||||| Sbjct 402 TCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGA---TCTGGGGGAATTCC 346 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| ||||| || ||||| ||||| || || || || | |||||| | ||| |||||||| Sbjct 345 TTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAG 286 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || | || |||||||| || ||||| Sbjct 285 CGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq11905 Length=336 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || | ||||| ||| |||||||||||| || |||||| Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||||||| | ||| ||||| |||||||||| | ||||| |||| Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||| ||||| |||||||| || | ||| || || ||| Sbjct 207 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 266 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || ||||| || ||||| ||||| || ||||| || ||||| Sbjct 267 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | ||| | |||| ||| |||||||||||| || |||||| Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||||||| | ||| ||||| |||||||||| | ||||| |||| Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||| ||||| |||||||| || | ||| || || ||| Sbjct 165 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 224 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || ||||| || ||||| ||||| || ||||| || ||||| Sbjct 225 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | ||| | |||| ||| |||||||||||| || |||||| Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||||||| | ||| ||||| |||||||||| | ||||| |||| Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||| ||||| |||||||| || | ||| || || ||| Sbjct 30643 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 30584 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || ||||| || ||||| ||||| || ||||| || ||||| Sbjct 30583 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | ||| | |||| ||| |||||||||||| || |||||| Sbjct 29952 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 29893 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||||||| | ||||||||| |||||||||| | ||||| |||| Sbjct 29892 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 29833 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||| || || || |||||||| || | || || || ||| Sbjct 29832 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 29773 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||| || || || ||||| || ||||| |||||||| Sbjct 29772 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCAT 29726 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | ||| | |||| ||| |||||||||||| || |||||| Sbjct 30180 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30121 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||||||| | ||||||||| |||||||||| | ||||| |||| Sbjct 30120 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30061 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||| || || || |||||||| || | || || || ||| Sbjct 30060 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 30001 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||| || || || ||||| || ||||| || ||||| Sbjct 30000 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 >seq11483 Length=76730 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| || |||||||| | | || | ||| ||||||||||||||||| ||||||| Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| | ||| ||| ||| || ||||| |||||||| || ||| ||| || || | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || || ||| | ||| |||||||| || || || || || || || || || |||| Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 50857 AAATCTGCAT 50848 >seq12829 Length=36573 Score = 114 bits (126), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| |||||||| || | | || || || || |||| |||||||| || || | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||| |||||||||| ||||| || ||||||||||| || |||||| |||||| | Sbjct 35423 TCAAACGCTGTTGA---TCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACAT 35367 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 ||||||| ||||| | ||| ||||| | || || || || ||||| || || || | Sbjct 35366 TTTCTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTA 35307 Query 288461 CGAATATCTGCAT 288473 | || || ||||| Sbjct 35306 CAAAGATTTGCAT 35294 >seq8209 Length=47891 Score = 107 bits (118), Expect = 5e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || || || || |||||||| ||||| || | |||||| | ||| || ||| Sbjct 18919 CCTTCTTTGTCTTGAATCTTAGCTTTCACATTTTCAATGGTATCGCTGGGTTCGACCTCG 18860 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || ||||| ||||| || || |||||||||||||| || ||||| ||||| ||| Sbjct 18859 AGAGTGATGGTCTTACCAGTTAGAGTCTTGACGAAAATTTGCATGATGTTCTTC 18806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179459591503742