Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7989 109 6e-19 seq5713 109 6e-19 seq449 104 3e-17 seq4268 102 9e-17 seq945 102 9e-17 seq4379 100 3e-16 seq8209 82.4 8e-11 >seq7989 Length=79767 Score = 109 bits (120), Expect = 6e-19 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 79446 TTTAAAAAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 79505 Query 57052 ACATACTCACCACTATACTACCGAGG-ATTGA 57082 ||||| |||||||||||||||||| ||||| Sbjct 79506 GGATACTTACCACTATACTACCGAGGAATTGA 79537 >seq5713 Length=114977 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || || | |||||||| || || || ||||| ||||||||||| | Sbjct 41002 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGA 40943 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | || ||||||||||| ||||| || ||||| || | || Sbjct 40942 AAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGG 40883 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| || ||| |||| | ||| | || | | || ||||| | ||| | Sbjct 40882 AATTCCTTCCTTATCT-TGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGA 40824 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||| |||||||||||| || || | || || || ||||| |||||||| Sbjct 40823 CTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||||||||| |||| |||| || ||||| ||||| ||||||| ||||| | |||| Sbjct 41671 CAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTC 41612 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 |||| || ||||||||||| ||||| || || || || | || | | ||||| || Sbjct 41611 TTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATC 41552 Query 42116 CATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 ||| |||| | || ||| | | | || ||||| | ||| || |||| ||| || | Sbjct 41551 T-TGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAG 41493 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || |||| || || || ||||||||||| Sbjct 41492 TTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || || | |||||||| || || || ||||||||||| ||||| | Sbjct 41458 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 41399 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || ||||| || || || ||||| ||||| || ||||| || | || Sbjct 41398 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41339 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | || | | || ||||| | ||| | Sbjct 41338 AATTC-CTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGA 41280 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||| || ||||| || |||| || || || ||||||||||| Sbjct 41279 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 >seq449 Length=135954 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 135805 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 135746 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 | ||||||||||||||||||| ||| Sbjct 135745 TTACCACTATACTACCGAGGAATGA 135721 >seq4268 Length=52723 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 23146 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 23087 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 23086 TTACCACTATACTACCGAGGA 23066 >seq945 Length=45805 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 9575 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 9634 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 9635 TTACCACTATACTACCGAGGA 9655 >seq4379 Length=409 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || || | |||||||| || || || ||||||||||| ||||| | Sbjct 243 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 184 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || ||||| || || || ||||| ||||| || ||||| || | || Sbjct 183 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 124 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | || | | || ||||| | ||| | Sbjct 123 AATTC-CTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGA 65 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||| || ||||| || |||| || || || ||||||||||| Sbjct 64 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq8209 Length=47891 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || || || ||||||||||| || || ||||| |||||||| |||| Sbjct 19112 CCTCCTCTCAATCGTAAGACCAAATGCAAAGTTGATTCTTTTTGGATATTGTAGTCAGAA 19053 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || || | || || ||||| || |||||||| || | ||||||||||| Sbjct 19052 AGGGTACGTCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTC 19000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543125281627760