Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5713 131 2e-25 seq4379 131 2e-25 seq11905 111 2e-19 seq9601 109 5e-19 seq9555 109 5e-19 seq6746 87.8 2e-12 seq5251 86.0 6e-12 seq11230 84.2 2e-11 >seq5713 Length=114977 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| || || | ||| | ||||||||||||||||| || ||||| | Sbjct 41458 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 41399 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || || |||||||| | ||||| || ||||| || || || Sbjct 41398 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41339 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| ||||| | |||| ||||| ||| ||| | ||||| | || || | Sbjct 41338 AATTCCTTCTTTATCTTG-AATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGA 41280 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | || || || || || ||||| ||||| |||||||| Sbjct 41279 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| || | ||| | |||||||| ||||| || || ||||| | Sbjct 41230 ACCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGA 41171 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || || |||||||| | ||||| || ||||| || || || Sbjct 41170 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41111 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCA 64394 |||||| ||||| ||||| ||||| |||||| | || || |||| | || || | Sbjct 41110 AATTCCCTCTTTATCTTGAATTTTG-GCTTTAACGTTTTCAATGGTATCGCTGGGTTCGA 41052 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | || || || ||||||||||| |||||||| ||||| Sbjct 41051 CTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| || || | ||| | |||||||||||||| || |||||||| | Sbjct 41002 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGA 40943 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| | || || || || | ||||| || ||||| || || || Sbjct 40942 AAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGG 40883 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| ||||| |||||| ||| | ||||| | | || || Sbjct 40882 AATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGAC 40823 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | || | ||| || || ||||||||||| ||||| || |||||||| Sbjct 40822 TTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || || ||||| | || || | ||||||| | || || || Sbjct 41655 GTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTCTTCTAATTGTTTACCA 41596 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| || || || || || ||||||||||| || ||||| | |||| ||||| Sbjct 41595 GCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTG-AATTTTAGCTTT 41537 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | ||||| | || || ||||| | || | || || || || || || Sbjct 41536 CACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 41477 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| |||||||| Sbjct 41476 TTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| || || | ||| | ||||||||||||||||| || ||||| | Sbjct 243 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 184 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || || |||||||| | ||||| || ||||| || || || Sbjct 183 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 124 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| ||||| | |||| ||||| ||| ||| | ||||| | || || | Sbjct 123 AATTCCTTCTTTATCTTG-AATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGA 65 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | || || || || || ||||| ||||| |||||||| Sbjct 64 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq11905 Length=336 Score = 111 bits (122), Expect = 2e-19 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||||| || ||||||||||| |||||||| || | || | ||||||| Sbjct 104 CACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTC 163 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || ||||| ||||| | || | | || |||||||| || || |||||||| ||||| Sbjct 164 GAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 223 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTC 64411 | |||| ||||| || || | ||| || |||| || ||||||| ||||| || Sbjct 224 GA-TTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGC-TCAACTTCTAAAGTTATCGTT 281 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | |||||| |||||||||||||| Sbjct 282 TTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 109 bits (120), Expect = 5e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| |||| || ||||||||||| |||||||| || | || | ||||||| Sbjct 63 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCG 122 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| ||||| | || | | || |||||||| || || |||||||| ||||| Sbjct 123 AGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGG 182 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| || || | ||| || |||| || ||||||| ||||| || | Sbjct 183 A-TTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGC-TCAACTTCTAAAGTTATCGTTT 240 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| | |||||| |||||||||||||| Sbjct 241 TTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 109 bits (120), Expect = 5e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| |||| || ||||||||||| |||||||| || | || | ||||||| Sbjct 30745 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCG 30686 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| ||||| | || | | || |||||||| || || |||||||| ||||| Sbjct 30685 AGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGG 30626 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| || || | ||| || |||| || ||||||| ||||| || | Sbjct 30625 A-TTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGC-TCAACTTCTAAAGTTATCGTTT 30568 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| | |||||| |||||||||||||| Sbjct 30567 TTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| |||| || ||||||||||| |||||||| || | || | ||||||| Sbjct 30162 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCG 30103 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || ||||| | || | | || |||||||| || || |||||||| ||||| Sbjct 30102 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGG 30043 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| || || | || | | |||| || ||||| | ||| | || || Sbjct 30042 ATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGC-TCGACTTCCAAAGTGATCGTTTT 29984 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | |||||| |||||||||||||| Sbjct 29983 TCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 >seq6746 Length=106662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 154047 ACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATT 154106 || || |||||||||| ||| ||| | |||||||| ||| ||||| ||||| || Sbjct 30751 ACTCGTCGCACATACATATTTGAAGTGTATGGCTCGAATCCTTCATTGTTTCCTAAAATC 30692 Query 154107 TGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTT 154166 || || || | ||||| ||||| |||| | ||| || ||||| | |||||||||| Sbjct 30691 TGGGCAGTGGAAGCTGTCGGCATTGGAGCCAATAGCAACGAATTTCGTACACCGTGTTTT 30632 Query 154167 GCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATG 154226 || ||| ||| | | ||||||||| || || || |||||||||||| Sbjct 30631 TTGATTTTTTCTTTCAAAGCCGACCAATTCCATAACGAAGTCGGGGTCACGTTCCACATA 30572 Query 154227 TCGTATTGCAAAA 154239 || ||||| |||| Sbjct 30571 TCATATTGTAAAA 30559 >seq5251 Length=56147 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 132858 TCGTCTCTTGATATAAGCTCGTTGCTGAACGTGAGGCCGGGCATGATGCCTTTTGTTTTA 132917 || ||||||||||| | ||||| ||||| || | |||||||| | ||| || | || Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 132918 ATAAAAAATATTGCCGCAAAACTGCCCGAAAAGAACACGCCTTCTACAATTGCAAAAGCC 132977 | |||||||||| |||||||| || ||||| || | ||||| ||| |||||| || Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 132978 ACCATTCGTCTTGCCAA 132994 || |||| | | ||||| Sbjct 14672 ACGATTC-TTTCGCCAA 14687 >seq11230 Length=416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG-CGACGGTGCGCGCGTCTT 64292 ||| | ||||| || |||||||| ||||| ||||| || | ||| | || | |||| Sbjct 294 CACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGC-CATCTT 236 Query 64293 CAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTT 64352 | | ||| || ||||| | || | | || |||||||| || || |||||||| |||| Sbjct 235 CCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTT 176 Query 64353 GTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTC 64411 | || || ||| || || | ||| || |||| || ||||| | ||| | || Sbjct 175 GGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGC-TCGACTTCCAAAGTGATCGTT 117 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||||| |||||||||||||| Sbjct 116 TTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499564300977160