Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11905 125 7e-24 seq9601 122 9e-23 seq9555 122 9e-23 seq5713 107 2e-18 seq11230 89.7 5e-13 seq12829 87.8 2e-12 seq4379 84.2 2e-11 >seq11905 Length=336 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | | || || ||||| ||||||||||||||| Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| |||||||| || |||| |||| | | |||||||| || || Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| ||| | | ||| | ||||||| || ||| || Sbjct 207 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 266 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || |||||||| || ||||| ||||| Sbjct 267 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || ||||| || | | | || || ||||| ||||||||||||||| Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| |||||||| || |||| |||| | | |||||||| || || Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||||| || ||| || Sbjct 165 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 224 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || |||||||| || ||||| ||||| Sbjct 225 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || ||||| || | | | || || ||||| ||||||||||||||| Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| |||||||| || |||| |||| | | |||||||| || || Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||||| || ||| || Sbjct 30643 ATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACT 30584 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || |||||||| || ||||| ||||| Sbjct 30583 TCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || ||||| || | | | || || ||||| ||||||||||||||| Sbjct 29952 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 29893 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| ||||||||||| |||| |||| | | |||||||| || || Sbjct 29892 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 29833 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| || || | | ||| | ||||| | || ||| || Sbjct 29832 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 29773 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | |||||| || || |||||||| || || ||||||||| Sbjct 29772 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATG 29725 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || ||||| || | | | || || ||||| ||||||||||||||| Sbjct 30180 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30121 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| ||||||||||| |||| |||| | | |||||||| || || Sbjct 30120 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30061 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| || || | | ||| | ||||| | || ||| || Sbjct 30060 ATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACT 30001 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || |||||||| || ||||| ||||| Sbjct 30000 TCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | | || |||||||| ||||||||||| ||| Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | ||||| |||| |||| | | |||||||| || || Sbjct 30931 AACGTTCTGCCA-TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 30873 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | ||| | ||||||| || ||| || Sbjct 30872 GATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGAC 30813 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || || ||||| || ||||| ||||| Sbjct 30812 TTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq5713 Length=114977 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || ||||||| | || |||||||| || || || ||| Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || |||||||| |||| |||| ||||| || || || || || Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || || ||||| || ||| |||| | ||||| | ||| | ||| ||| | | || || Sbjct 41109 ATTCCCTCTTTATCT-TGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGAC 41051 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||||||||||| |||||| || ||||||||||| Sbjct 41050 TTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || ||||||| | || || ||||| || ||||| ||| Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||||||||| | |||| ||||| || || || || || Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | ||||| | || | ||| ||| | | || || Sbjct 40881 ATTCCTTCCTTATCT-TGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGAC 40823 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||||||||||| |||||| || || |||||||| Sbjct 40822 TTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 40775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || ||||||| | || || |||||||| || || ||| Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || |||||||| |||| |||| ||||| || || || || || Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||| | ||| | | || | ||| ||| | | || || Sbjct 41337 ATTCCTTCTTTATCT-TGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 41279 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||||||||| | ||||| || || || ||||| Sbjct 41278 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 >seq11230 Length=416 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | | || || || ||||| |||||||| ||| Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | ||||| |||| |||| | | |||||||| || || Sbjct 251 AACGTTCTGCCA-TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 193 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | ||| | ||||||| || ||| || Sbjct 192 GATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGAC 133 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| || || || ||||| || ||||| ||||| Sbjct 132 TTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq12829 Length=36573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 |||||||| || || || | ||||||| ||||| || ||||| |||| | | || Sbjct 35481 TTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAATC 35422 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCC 138546 | ||||||||| || ||||| || |||||||| || ||||| ||||| | | ||| Sbjct 35421 AAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTTCT 35362 Query 138547 ACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | | || | | || || || | || | |||||||| || || ||||||||||| Sbjct 35361 ATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAAAG 35302 Query 138607 ATCTGCAT 138614 || ||||| Sbjct 35301 ATTTGCAT 35294 >seq4379 Length=409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || ||||||| | || || |||||||| || || ||| Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || |||||||| |||| |||| ||||| || || || || || Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||| | ||| | | || | ||| ||| | | || || Sbjct 122 ATTCCTTCTTTATCT-TGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 64 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||||||||| | ||||| || || || ||||| Sbjct 63 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496182445924080