Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9555 149 6e-31 seq11905 145 7e-30 seq11230 145 7e-30 seq9601 140 3e-28 seq5713 134 1e-26 seq11483 129 5e-25 seq4379 122 8e-23 seq12829 113 4e-20 seq6746 91.5 1e-13 >seq9555 Length=64705 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| || | || || || |||||||||||||| || || || || Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| |||||||| ||| | ||||||| ||| ||||| || || Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| ||||| || || |||| ||| | |||||||| | ||||||| Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 30812 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| | |||||| ||||| || ||||| || ||||||||||| Sbjct 30811 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| |||||||| || || ||| Sbjct 30766 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 30707 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | ||| ||||| ||| | ||||||| ||| ||||| || Sbjct 30706 CTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 30647 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||||| ||| | |||||||| | ||| Sbjct 30646 GGGATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCA 30587 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| ||||| |||||||| || ||||||||||| Sbjct 30586 ACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| |||||||| || || ||| Sbjct 30183 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 30124 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | ||||||||| ||| | ||||||| ||| ||||| || Sbjct 30123 CTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 30064 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| ||| | ||||| || | |||| Sbjct 30063 GGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCG 30004 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| || || |||||||| || ||||||||||| Sbjct 30003 ACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 >seq11905 Length=336 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||||| | ||| || || ||||| |||||||| || || ||| Sbjct 84 ATACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 143 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | ||| ||||| ||| | ||||||| ||| ||||| || Sbjct 144 CTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 203 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||||| ||| | |||||||| | ||| Sbjct 204 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCA 263 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| ||||| |||||||| || ||||||||||| Sbjct 264 ACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq11230 Length=416 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||||| | ||| || || ||||| || || ||||| || || Sbjct 314 ATACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCA 255 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| ||||| |||||||| ||| | ||||||| ||| ||||| || Sbjct 254 CTCAACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 195 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||||||||| ||||| || || |||| ||| | |||||||| | |||| Sbjct 194 GGGATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCG 135 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| ||||| || ||||| || ||||||||||| Sbjct 134 ACTTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCG 45296 |||||||| ||||| ||||| ||||| ||| | |||||||| | ||| ||||| Sbjct 416 CCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCT 357 Query 45297 AGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||| | |||||| ||||| |||||||| || ||||||||||| Sbjct 356 AAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| |||||||| || || ||| Sbjct 42 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 101 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | ||| ||||| ||| | ||||||| ||| ||||| || Sbjct 102 CTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 161 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||||| ||| | |||||||| | ||| Sbjct 162 GGGATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCA 221 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| ||||| |||||||| || ||||||||||| Sbjct 222 ACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq5713 Length=114977 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||||||| | ||||| || ||||| ||||||||||||||||| | Sbjct 41685 CCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAG 41626 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || |||||||| || ||| | || | ||||| || || || ||| Sbjct 41625 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGA 41566 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| |||||||||||||| ||| | || | || | ||| ||| | ||||| Sbjct 41565 ATTCCTTCCTTATCTTGAATTTTAGCTTTCA-CGTTCTCGATGGTATCGCTGGGTTCGAC 41507 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| |||| ||||| || |||| ||||| || || |||||||| Sbjct 41506 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||||||||||||||||||| || ||| | ||| || | |||||| || Sbjct 41199 GTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCG 41140 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || | |||||||| || || ||||| || ||||||||||||||||| ||| Sbjct 41139 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTGAATTTTGGCTTTA 41080 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | ||| ||| | ||||||||||| |||| ||||| || || | |||| Sbjct 41079 ACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAGTT 41020 Query 45324 TTTACAAAAATTTGCAT 45340 || || ||||| ||||| Sbjct 41019 TTAACGAAAATCTGCAT 41003 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| ||||| |||||||||||| || ||| | ||| || | |||||| || Sbjct 41427 GTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCG 41368 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || | |||||||| || || ||||| |||||||||||||||||||| ||| Sbjct 41367 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTTC 41308 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | ||| ||| | ||||||||||| |||| ||||| || |||| ||| Sbjct 41307 ACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTT 41248 Query 45324 TTTACAAAAATTTGCAT 45340 || || || |||||||| Sbjct 41247 TTGACGAAGATTTGCAT 41231 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| ||||||||||| |||||| | ||| | ||| ||||||||||| || Sbjct 40971 GTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACCA 40912 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || | |||||||| || || ||||| ||||| |||||||||||||| ||| Sbjct 40911 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCTTTT 40852 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | ||| ||| | ||||||||||| || | ||||| || || | |||| Sbjct 40851 ACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAAAGTT 40792 Query 45324 TTTACAAAAATTTGCAT 45340 || || || || ||||| Sbjct 40791 TTGACGAAGATCTGCAT 40775 >seq11483 Length=76730 Score = 129 bits (142), Expect = 5e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 ||||| || ||||| || | |||| | ||| || ||||||||||| ||| | ||| Sbjct 51035 TTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGATC 50976 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 |||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||||| || Sbjct 50975 AATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCTCA 50916 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | | |||||||| ||||||||||| |||| ||||| || || || ||||| || ||| Sbjct 50915 ATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGAAA 50856 Query 45333 ATTTGCATC 45341 || |||||| Sbjct 50855 ATCTGCATC 50847 >seq4379 Length=409 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| ||||| |||||||||||| || ||| | ||| || | |||||| || Sbjct 212 GTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCG 153 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || | |||||||| || || ||||| |||||||||||||||||||| ||| Sbjct 152 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTTC 93 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | ||| ||| | ||||||||||| |||| ||||| || |||| ||| Sbjct 92 ACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTT 33 Query 45324 TTTACAAAAATTTGCAT 45340 || || || |||||||| Sbjct 32 TTGACGAAGATTTGCAT 16 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| || ||| | || | |||||||| || || ||||| ||||| || Sbjct 399 ATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTT 340 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| ||| | || | ||| ||| | ||||||||||| |||| Sbjct 339 ATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTAAT 280 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| || || |||||||| Sbjct 279 AGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq12829 Length=36573 Score = 113 bits (124), Expect = 4e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| || | ||||| || || || || || ||||| |||||||||||||||||| Sbjct 35439 TGTTTTCCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATT 35380 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| | ||||| | || |||| || ||||| | ||| | ||||| ||| Sbjct 35379 TTCTGTTTCACATTTTCTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCG 35320 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||||||| ||||||||| Sbjct 35319 GTGAGCGTTTTTACAAAGATTTGCATC 35293 >seq6746 Length=106662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 ||||| || || || |||||||| | || ||||| || ||| | ||| | ||| Sbjct 30558 ATTTTACAATATGATATGTGGAACGTGACCCCGACTTCGTTATGGAATTGGTCGGCTTTG 30617 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 ||| || || | |||||| | || || ||| || | |||| |||||||| Sbjct 30618 AAAGAAAAAATCAAAAAACACGGTGTACGAAATTCGTTGCTATTGGCTCCAATGCCGACA 30677 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTG 124280 || ||||||| || |||||||||||||| ||| |||||||| | |||| ||| || Sbjct 30678 GCTTCCACTGCCCAGATTTTAGGAAACAATGAAGGATTCGAGCCATACACTTCAAATATG 30737 Query 124281 TACGTGCGACGAGTG 124295 || |||||||||||| Sbjct 30738 TATGTGCGACGAGTG 30752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451930376634440