Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9555 141 2e-28 seq11230 118 2e-21 seq9601 118 2e-21 seq11905 116 9e-21 seq5713 116 9e-21 seq4379 107 5e-18 seq11483 104 6e-17 >seq9555 Length=64705 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || |||||||||| |||||||||| ||| || Sbjct 30985 CGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTT 30926 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| ||| |||||||||||||| | | || ||||| || || ||| Sbjct 30925 CTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCT 30866 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| ||| ||||| ||||| | | || || ||||| Sbjct 30865 TCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAA 30806 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || ||||| |||||||| |||||||| Sbjct 30805 GTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTG 30768 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || || ||||||| ||||||||| ||| || ||||| ||||| || || Sbjct 30157 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTG 30098 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||||||||||| | | || ||||| || || |||||| || || ||||| Sbjct 30097 TTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTT 30038 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| ||||| ||||| | | || || ||||| |||||||| || ||||| Sbjct 30037 AGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGT 29978 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| Sbjct 29977 AAGAGTTTTCACGAAAATTTG 29957 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || || ||||||| ||||||||| ||| || ||||| ||||| || || Sbjct 29929 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTG 29870 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||||||||||| | | || ||||| || || |||||| || || ||||| Sbjct 29869 TTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTT 29810 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| ||||| ||||| | | || || ||||| |||||||| || ||||| Sbjct 29809 AGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGT 29750 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || Sbjct 29749 AAGAGTTTTCACGAAGATCTG 29729 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || || ||||||| ||||||||| ||| || ||||| ||||| || || Sbjct 30740 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTG 30681 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||||||||| | | || ||||| || || |||||| || || || || Sbjct 30680 CTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGGAT-TT 30622 Query 199546 TTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | |||| ||| ||||| ||||| | | || || || || || ||||| || || | Sbjct 30621 TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGG 30562 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 ||||||||||||| |||||||| Sbjct 30561 TGAGAGTTTTCACGAAAATTTG 30540 >seq11230 Length=416 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || || | ||||||||| ||| || || |||||||||| ||| Sbjct 287 TGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATCTTCCAACTGT 228 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | | || ||||| || || |||||| || || ||||| Sbjct 227 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTA 168 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||||| ||||| | | || || ||||| |||||||| || || ||| Sbjct 167 GCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCGGTG 108 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || |||||||| |||||||| Sbjct 107 AGCGTTTTCACGAAAATTTG 88 >seq9601 Length=294 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || || ||||||| ||||||||| ||| || ||||| ||||| || || Sbjct 68 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTG 127 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||||||||| | | || ||||| || || |||||| || || || || Sbjct 128 CTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGGAT-TT 186 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || ||| ||||| ||||| | | || || || || || ||||| || || | Sbjct 187 TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGG 246 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 ||||||||||||| |||||||| Sbjct 247 TGAGAGTTTTCACGAAAATTTG 268 >seq11905 Length=336 Score = 116 bits (128), Expect = 9e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || ||||||| ||||||||| ||| || ||||| ||||| || ||| Sbjct 111 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGC 170 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | | || ||||| || || |||||| || || || ||| Sbjct 171 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGAT-TTT 229 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || ||| ||||| ||||| | | || || || || || ||||| || || || Sbjct 230 AGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGGT 289 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 |||||||||||| |||||||| Sbjct 290 GAGAGTTTTCACGAAAATTTG 310 >seq5713 Length=114977 Score = 116 bits (128), Expect = 9e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 |||||| |||||||||| || || || | | ||| ||||||||||| || || || || Sbjct 41200 AGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41141 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||||||||| ||||| || || |||||| ||| || ||||| ||| || | Sbjct 41140 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTGAAT-TTTGGCTT 41082 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | ||| ||| | ||| || | | ||| || || | ||| || || ||||| || | || Sbjct 41081 TAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAG 41022 Query 199611 TTTTCACAAAAATTTG 199626 |||| || ||||| || Sbjct 41021 TTTTAACGAAAATCTG 41006 Score = 113 bits (124), Expect = 1e-19 Identities = 150/205 (73%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 |||||| || ||||||| ||||| || | | ||| ||||||||||||| || || || Sbjct 40972 AGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACC 40913 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 |||||||||||||| ||||| || || ||||||||| || ||||| ||| || | Sbjct 40912 AGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAAT-TTTGGCTT 40854 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | || |||| ||| || ||| ||| || || | |||||| || ||||| || | || Sbjct 40853 TTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAAAG 40794 Query 199611 TTTTCACAAAAATTTGGTACATTTT 199635 |||| || || || || |||||| Sbjct 40793 TTTTGACGAAGATCTG---CATTTT 40772 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||| || || || || ||||||| || || |||| | ||| Sbjct 41679 CGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTT 41620 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||| ||||| | || || || |||||||||||||| || || || || ||||||| Sbjct 41619 CTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCT 41560 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || ||||| ||| || |||||| |||| ||| || | | ||| || || | Sbjct 41559 TCCTTATCTTGAAT-TTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAG 41501 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || | ||||| || || ||||| Sbjct 41500 CGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTG 41462 Score = 107 bits (118), Expect = 5e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 |||||| || ||||| | || || || | | ||| ||||||||||| || || || || Sbjct 41428 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41369 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||||||||| ||||| || || |||||||||| || ||||| ||| || | Sbjct 41368 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 41310 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 |||| |||| ||| || | | ||| || || | ||| || || ||||| || | | Sbjct 41309 TCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATG 41250 Query 199611 TTTTCACAAAAATTTG 199626 |||| || || ||||| Sbjct 41249 TTTTGACGAAGATTTG 41234 >seq4379 Length=409 Score = 107 bits (118), Expect = 5e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 |||||| || ||||| | || || || | | ||| ||||||||||| || || || || Sbjct 213 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 154 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||||||||| ||||| || || |||||||||| || ||||| ||| || | Sbjct 153 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 95 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 |||| |||| ||| || | | ||| || || | ||| || || ||||| || | | Sbjct 94 TCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATG 35 Query 199611 TTTTCACAAAAATTTG 199626 |||| || || ||||| Sbjct 34 TTTTGACGAAGATTTG 19 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 199466 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATT 199525 || ||||||||||||| || || || |||||||||||||| ||||| || || |||| Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 199526 CCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATC 199584 ||||| || ||||| ||| || || || |||| ||| || ||| ||| || || Sbjct 347 CCTTCCTTATCTTGAAT-TTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTC 289 Query 199585 CAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||| || || ||||| || | ||||| || || ||||| Sbjct 288 GAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTG 247 >seq11483 Length=76730 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | ||| ||||| | ||| || ||||||||||| | || ||||| |||||||| Sbjct 51035 TTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGATC 50976 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 | | |||||| ||||| ||| ||||| ||||||||||| || || || || Sbjct 50975 AATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCTCA 50916 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | | ||| | | ||| || || | || || || ||||||||||| |||||||| ||| Sbjct 50915 ATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGAAA 50856 Query 199622 ATTTG 199626 || || Sbjct 50855 ATCTG 50851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178726912518563