Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5713 138 1e-27 seq9555 123 2e-23 seq5251 122 9e-23 seq11905 118 1e-21 seq11230 109 5e-19 seq9601 105 7e-18 seq8209 91.5 1e-13 >seq5713 Length=114977 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || ||||| || || |||| ||||| ||| | Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| |||||| ||||| | || ||||||||||||||| | || || Sbjct 41063 GATACCATTGAAAACG-TTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCA 41121 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| |||||||| || || || | | || ||| ||| || || Sbjct 41122 GCAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAA 41181 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| | |||||||| || || |||||||| || Sbjct 41182 TATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGG 41229 Score = 122 bits (134), Expect = 9e-23 Identities = 171/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 38233 TCTT-TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGAC 38291 |||| || ||||||||| || ||||| ||||| | || || ||||||||||| |||| Sbjct 40763 TCTTGTAGAAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAA 40822 Query 38292 GTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATT 38351 ||||| | | ||| | | | | | | |||| ||||| | || || || |||||| Sbjct 40823 GTCGAACCAAGCGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATT 40882 Query 38352 CCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 38411 ||| | || || || || ||||| | ||| || ||||| |||| || | | || || Sbjct 40883 CCCCCAGATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTT 40942 Query 38412 AACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| |||||||| ||| |||| | |||||||| || || |||||||| || Sbjct 40943 TCCGATTACAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 >seq9555 Length=64705 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||||||||| || ||||| ||||| | || |||||| | || Sbjct 30765 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 30824 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| |||||||| || || || ||||||| Sbjct 30825 GACACAATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCA 30883 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || |||||| |||| || | | || | | |||||||| Sbjct 30884 ACAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAA 30943 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || ||||| ||||| Sbjct 30944 CATCCAAAAGGAATCCACCCTTCACTTGGTATTGCGT 30980 Score = 105 bits (116), Expect = 7e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38234 CTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGT 38293 || || ||| ||||| || ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 29716 CTATATAAACATGCAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGT 29775 Query 38294 CGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTC 38352 |||| | | |||| | | ||||| | || | || |||| |||||||| || || | Sbjct 29776 CGAGCCGTCGGACACGATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGTATCC 29834 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 | |||||||||| | | || | ||| || ||||| || || |||| | || | | Sbjct 29835 CACCCGACCAACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGA 29894 Query 38413 ACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||||||||||| ||| | || || || || || Sbjct 29895 GCGACTACAACATCCAAAAAGAATCCACCCTTCACTTAGT 29934 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || ||||| ||||| ||||| | || |||||| | | Sbjct 29954 ATGCAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCG 30013 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| |||||||| || || || ||||||| Sbjct 30014 GACACGATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCA 30072 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || ||||| || || |||| | || | | ||||||||| Sbjct 30073 ACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 30132 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| ||| | || || || || || Sbjct 30133 CATCCAAAAAGAATCCACCCTTCACTTAGT 30162 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || ||||| || || | || || ||| | || Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| ||||||| |||||||| || || || ||||||| Sbjct 30597 GACACAATCGAAAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCA 30655 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || || || || || |||| | || | | ||||||||| Sbjct 30656 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 30715 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| ||| | || || || || || Sbjct 30716 CATCCAAAAAGAATCCACCCTTCACTTAGT 30745 >seq5251 Length=56147 Score = 122 bits (134), Expect = 9e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || || || || | |||||| |||||||| || |||||||| || || | ||| | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || ||||| || ||||| |||| || || || || || || | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | | ||||| || || |||| || || ||||| | || ||||| || | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||||| || || || ||||| ||||| || || || || Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 |||||| || || ||||| || |||||||||||||| || || || || | | || || Sbjct 14891 ATACATCTCAGAATGTACATTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTC 14950 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | || |||||||||||| |||||| || |||| || |||||||| ||||| || Sbjct 14951 GGTAACTTGCACTTCTTGATTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGA 15010 Query 133308 GGCGGCGAAAAAGGC 133322 ||| || |||||||| Sbjct 15011 GGCTGCAAAAAAGGC 15025 >seq11905 Length=336 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || ||||| || || | || || ||| | || Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| ||||||| |||||||| || || || ||||||| Sbjct 253 GACACAATCGAAAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCA 195 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || || || || || |||| | || | | ||||||||| Sbjct 194 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 135 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || || ||||||||| | ||| Sbjct 134 CATCCAAAAAGAATCCACCCTTCATTTGGTGTTACGT 98 >seq11230 Length=416 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||||||||| || ||||| ||||| | || |||||| | || Sbjct 85 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 144 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| |||||||| || || || ||||||| Sbjct 145 GACACAATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCA 203 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || |||||| |||| || | | || | | |||||||| Sbjct 204 ACAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAA 263 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || ||| | || || ||||||||| | ||| Sbjct 264 TATTCAGAAAGAATCCACCCTTCATTTGGTGTTACGT 300 >seq9601 Length=294 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || ||||| || || | || || ||| | || Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| ||||||| |||||||| || || || ||||||| Sbjct 211 GACACAATCGAAAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCA 153 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || || || || || |||| | || | | ||||||||| Sbjct 152 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 93 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| ||| | || || || || || Sbjct 92 CATCCAAAAAGAATCCACCCTTCACTTAGT 63 >seq8209 Length=47891 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| | |||| ||| ||||||||||| || || | || Sbjct 18988 GGCATTCCCCCTGACCAGCAGCGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGACGT 19047 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||| |||||||| ||| | || |||||||||| | || |||||| Sbjct 19048 ACCCTTTCTGACTACAATATCCAAAAAGAATCAACTTTGCATTTGGTCTTACGATTGAGA 19107 Query 38466 GGCGG 38470 || || Sbjct 19108 GGAGG 19112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500092215909760