Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5713 163 6e-35 seq4379 154 3e-32 seq9601 152 1e-31 seq9555 152 1e-31 seq11905 150 4e-31 seq11230 145 2e-29 seq12829 122 2e-22 >seq5713 Length=114977 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | ||| || ||||| |||||||| ||||| ||||| | |||||||| Sbjct 41676 AGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTT 41617 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| | || ||||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct 41616 CCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCC 41557 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||||||||| || |||||||| ||||| || ||| ||||| || ||| Sbjct 41556 TTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTA 41497 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || || ||||| ||||| | |||||| Sbjct 41496 ATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||| ||||||||||||| ||||||||| |||||||| | || ||||| Sbjct 40972 AGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACC 40913 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || ||||| || ||||| ||||| ||||| || ||||||||||| || Sbjct 40912 AGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCTTT 40853 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||| ||||| || ||| ||||| || || | || || || |||||||| Sbjct 40852 TACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAAAGT 40793 Query 195123 TTTTACGAACACTTGCATTT 195142 ||| ||||| | ||||||| Sbjct 40792 TTTGACGAAGATCTGCATTT 40773 Score = 154 bits (170), Expect = 3e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||||||||| ||||||| |||||||| |||||||| || || || || Sbjct 41428 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41369 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || ||||| || ||||| ||||| |||||||| ||||||||||| || Sbjct 41368 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTT 41309 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||| ||||| || ||| ||||| || |||| || || || || || || Sbjct 41308 CACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 41249 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 41248 TTTGACGAAGATTTGCAT 41231 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || || ||||| ||||| ||||||| |||||||| |||||||| || || || || Sbjct 41200 AGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41141 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || ||||| || ||||| ||||| || ||||| ||||||||||| || Sbjct 41140 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTGAATTTTGGCTTT 41081 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| |||||||| || ||| ||||| || |||| || || || |||||||| Sbjct 41080 AACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAGT 41021 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | ||||| Sbjct 41020 TTTAACGAAAATCTGCAT 41003 >seq4379 Length=409 Score = 154 bits (170), Expect = 3e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||||||||| ||||||| |||||||| |||||||| || || || || Sbjct 213 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 154 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || ||||| || ||||| ||||| |||||||| ||||||||||| || Sbjct 153 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTT 94 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||| ||||| || ||| ||||| || |||| || || || || || || Sbjct 93 CACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 34 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 33 TTTGACGAAGATTTGCAT 16 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 ||||| |||||||| | || ||||| |||||||| || ||||| || ||||| ||||| Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||| || ||||||||||| || || ||||| ||||| || ||| ||||| Sbjct 347 CCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCG 288 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || || ||||| ||||| | |||||| Sbjct 287 AGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq9601 Length=294 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| ||||| |||||||| || ||||| ||| | ||||| || ||| Sbjct 60 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCT 119 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| ||||| || |||||||| | || ||||||||| || || || |||||||||||| Sbjct 120 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCT 179 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| |||||||| || || ||||| || || ||||| | || | ||| Sbjct 180 TGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTT 239 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | |||||| ||||| | |||||| Sbjct 240 TTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| ||||| |||||||| || ||||| ||| | ||||| || ||| Sbjct 30165 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCT 30106 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || |||||||| | || ||||||||| || || || |||||||||||| Sbjct 30105 TCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCT 30046 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||| || || |||||||| || ||||| | || | ||| Sbjct 30045 TGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTT 29986 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | |||||| ||||| | |||||| Sbjct 29985 TTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| ||||| |||||||| || ||||| ||| | ||||| || ||| Sbjct 30748 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCT 30689 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| ||||| || |||||||| | || ||||||||| || || || |||||||||||| Sbjct 30688 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCT 30629 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| |||||||| || || ||||| || || ||||| | || | ||| Sbjct 30628 TGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTT 30569 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | |||||| ||||| | |||||| Sbjct 30568 TTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| ||||| |||||||| || ||||| ||| | ||||| || ||| Sbjct 29937 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCT 29878 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || |||||||| | || ||||||||| || || || |||||||||||| Sbjct 29877 TCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCT 29818 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||| || || |||||||| || ||||| | || | ||| Sbjct 29817 TGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTT 29758 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | |||||| ||||| | ||||| Sbjct 29757 TTTCCCGTAAGAGTTTTCACGAAGATCTGCAT 29726 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| ||||| || ||||| || ||||| || | ||||| ||||| Sbjct 30977 CAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCATC 30918 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| || || |||||||| | || ||||||||| || || |||||||||||||| Sbjct 30917 TTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTC 30858 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||||||||| || || ||||| || || ||||| | || | ||| Sbjct 30857 TTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGT 30798 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | ||||| ||||| | |||||| Sbjct 30797 TTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq11905 Length=336 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| |||||||| || ||||| ||| | ||||| || |||||||| ||| Sbjct 111 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGC 170 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || ||||||||| || || || |||||||||||||| ||||| Sbjct 171 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATTTTA 230 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || || ||||| || || ||||| | || | ||| ||||| || Sbjct 231 GCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGGTG 290 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| ||||| | |||||| Sbjct 291 AGAGTTTTCACGAAAATTTGCAT 313 >seq11230 Length=416 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| ||||| ||||||||||| || | ||||| |||||||| | ||| Sbjct 287 TGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATCTTCCAACTGT 228 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || ||||||||| || || ||||||||||||||||| || || Sbjct 227 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTA 168 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || || ||||| || || ||||| | || | ||| ||||| || Sbjct 167 GCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCGGTG 108 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 107 AGCGTTTTCACGAAAATTTGCAT 85 >seq12829 Length=36573 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| ||||| | | ||| | |||||| || ||||| || || || || | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | || ||||| ||||||||||| |||||||| ||||||||||| || || || || | Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTT 35364 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || | || ||| ||| ||||| | || | || || || || | |||||||| | Sbjct 35363 CTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAA 35304 Query 195131 ACACTTGCAT 195140 | | |||||| Sbjct 35303 AGATTTGCAT 35294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109298379861863