Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11483 111 1e-19 seq12829 100 2e-16 seq9555 95.1 8e-15 seq11230 86.0 4e-12 seq5713 82.4 5e-11 >seq11483 Length=76730 Score = 111 bits (122), Expect = 1e-19 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| ||||||||||||||||| | | ||| | |||| || | |||||||| || || | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | || ||||| || | || | || ||||| || ||||||||||||||| || Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGAC--ATT 50920 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || ||||| || | || || |||| ||| || ||||| |||||||| || ||||| Sbjct 50919 CTCAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCAC 50860 Query 34970 AAAGATCTGCAT 34981 || |||||||| Sbjct 50859 GAAAATCTGCAT 50848 >seq12829 Length=36573 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| ||||| ||||| || || | | || |||| || ||||||||||||||||| | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | || || || ||| | || | ||| || || || ||| |||||||| || | Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTT 35364 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 |||| || ||| | ||||| || | ||||| ||||| || ||||| || || |||| Sbjct 35363 CTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAA 35304 Query 34972 AGATCTGCAT 34981 |||| ||||| Sbjct 35303 AGATTTGCAT 35294 >seq9555 Length=64705 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || || ||||||| ||| |||||| || ||||| ||||| | || | ||| | | || Sbjct 29937 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACG-TTCTTCCGTC 29879 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||||||||| || || | || ||| ||||| | || | || || ||||| Sbjct 29878 TTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 29819 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | | |||| || | ||| || || | || || || Sbjct 29818 TTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGT 29759 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||||| ||||| ||||| ||||||||||| || Sbjct 29758 TTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTT 29723 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || || ||||||| ||| |||||| || ||||| ||||| | || | ||| | | || Sbjct 30165 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACG-TTCTTCCGTC 30107 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||||||||| || || | || ||| ||||| | || | || || ||||| Sbjct 30106 TTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 30047 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | | |||| || | ||| || || | || || || Sbjct 30046 TTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGT 29987 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||||| ||||| ||||| || || |||||| Sbjct 29986 TTTTCCCGTAAGAGTTTTCACGAAAATTTGCATA 29953 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||||| ||| ||| || || ||||| ||||| | || | ||| ||| Sbjct 30977 CAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACG-TTCTGCCAT 30919 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | |||| |||||||||||| || || | || ||| ||||| | || | || || |||| Sbjct 30918 CTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGT 30859 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| |||||| | | || | || | ||| || || | || || | Sbjct 30858 CTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCG 30799 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| ||||| || ||||| || || |||||| Sbjct 30798 TTTTTCCGGTGAGCGTTTTCACGAAAATTTGCATA 30764 >seq11230 Length=416 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || ||||| |||| ||| |||||||||||| || ||||| | || | ||| |||| Sbjct 296 AACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACG-TTCTGCCATC 238 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||||||||| || || | || ||| ||||| | || | || || ||||| Sbjct 237 TTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTC 178 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | | || | || | ||| || || | || || || Sbjct 177 TTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGT 118 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| ||||| || ||||| || || |||||| Sbjct 117 TTTTCCGGTGAGCGTTTTCACGAAAATTTGCATA 84 >seq5713 Length=114977 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||| || | || |||||| || || || || || ||| Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| |||| ||||| || || || || || |||||||| ||| | || Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCT 34929 | || ||||| || ||| || ||| || |||| ||||| || | | Sbjct 40881 ATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTT-----GGTT 40827 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || |||| || |||||||| || || | ||| || || ||||||||||| || Sbjct 40826 CGACTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324582605032392