Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6746 167 3e-36 seq5251 159 4e-34 >seq6746 Length=106662 Score = 167 bits (184), Expect = 3e-36 Identities = 245/347 (71%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164 ||||| || | ||||| || ||||||||||| || || || | ||| ||||| || Sbjct 29713 TCGTACTTCTTGTATAATTTGTCAAATTCATCACCGTAACAATCAGATAAACCAGGGCAG 29654 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224 ||||| |||||||| | ||| | | | ||| || | |||| ||| || Sbjct 29653 TCATTTGGACACATAAGACTCCACGTTTGGTTACTTTCAACACGTCTCATGAATTCGTCA 29594 Query 48225 GGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT 48284 || ||||| ||||| ||||||||||| ||| ||| ||||| || || |||| | Sbjct 29593 GGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTTACCGGAATTCATC 29534 Query 48285 TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACA 48344 | ||| | ||| || | ||||| | |||||| ||||||||||| || || | | Sbjct 29533 CGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATAGATGGCGAAAGCG 29474 Query 48345 CCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAAC 48404 ||||||| ||| || ||||||||||| | ||||| ||||| | || || ||| | | Sbjct 29473 CCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATTGTAGACTTGAAGC 29414 Query 48405 ATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 || || |||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 29413 ATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATAACT 29367 >seq5251 Length=56147 Score = 159 bits (176), Expect = 4e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| ||||||||| ||| || ||||| || ||||| || |||||||| | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||| | |||||| || ||||| || |||||||| || |||||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | |||||| ||| || |||| | | || | ||||||| ||| |||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 |||| || || |||||||||||||| || || | ||| || || Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 19216 TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275 |||| | ||| || | ||| | |||||||||| ||| ||||| || ||||| | |||| Sbjct 14853 TCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACATTT 14912 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || || || || || ||||| || ||| |||| ||||| || | || ||||| | Sbjct 14913 TCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGATTG 14972 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || | ||| ||||| || || || || || |||||| ||||||||||| ||||| | Sbjct 14973 AAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAGATG 15032 Query 19396 TGTTTAATAAAATGTTTTTCATCTG 19420 || |||||| |||||||| |||| Sbjct 15033 TGGGAAATAAATTGTTTTTCTTCTG 15057 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| || | | |||||| |||||||||||||||| || || ||||| || | Sbjct 14077 CATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCATT 14136 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||||||| ||||| Sbjct 14137 CAATGATATTATTTCCATAAAATCAAACGGATT 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562018237245960