Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5251 165 1e-35 seq6746 91.5 2e-13 >seq5251 Length=56147 Score = 165 bits (182), Expect = 1e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| ||||||||| ||| || |||||||| ||||||| ||||||||| || Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||||||||| |||||| || ||||| || ||||||||||| ||||||||||| Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 || | | | || ||||| | | | ||||| ||||||| | | |||||||||| Sbjct 14672 ACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTGCC 14731 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 ||| ||||||||| ||||||||||| || || ||||| || Sbjct 14732 TTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAGGAA 14775 >seq6746 Length=106662 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 37204 CTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCC 37263 || ||| ||||||||||||| || |||||||| ||||||| ||| ||| | | || Sbjct 25742 CTTTACGTATCAATTCATTACTTAAAGTTAATCCGGGCATTACGCCTTTTTCCTGTAGCC 25683 Query 37264 AAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAA 37323 |||||||||| ||| | |||| || || ||||||||||| | |||||| ||||||| Sbjct 25682 AAAATATTGCAGCAGCACCACCAGCGAAAAAGATACCTTCAACGGTTGCAAACGCTACAA 25623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592221370359560