Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6746 82.4 6e-11 >seq6746 Length=106662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 ||||| ||||| || ||||| | ||||| || || || || || ||||| || || ||| Sbjct 3799 TGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACACCTAGACCC 3858 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCTCACGTAAAACTG 29999 || || | || | || || | ||||||| ||||| || | ||| || ||||| || Sbjct 3859 ATATCAGCAGAGCGTTGATACATGAGACACGAAAGCTCACCATTAGCT-ACATAAAATTG 3917 Query 30000 ACAC-ATGGTGTGGCACGGAGGAAGAGCCATG--AGGCCCAAGTCTTTGGGGTTCCAGGC 30056 ||| | | || |||||||| | ||||| ||| || || || |||||||| Sbjct 3918 -CACTAAGCAATGACACGGAGGTAATGCCATTTTAGGT--AAATCAACAGGATTCCAGGC 3974 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 30116 || | || || | || || | || ||| | |||| | | | ||||||| Sbjct 3975 ACATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATATTTTGCAA 4034 Query 30117 CTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30176 ||||| || || || | ||| || || ||| || ||||||| ||||| ||||| Sbjct 4035 TTGATCAACGCCTTGGCCAGTGTAATCGGCGAACATATCTTTGTACTCGGCTCCAAAATG 4094 Query 30177 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 |||||||||||| || || | || || || || || Sbjct 4095 CCTCCACTGGAATCCATAAATAGGACCGAGATCCCC 4130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408553412431997