Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5713 122 7e-23 seq4379 122 7e-23 seq11483 100 2e-16 >seq5713 Length=114977 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| |||||||| ||||| |||| ||||| Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || || ||||| ||| | ||| |||||| Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCCCCAGATCA 41349 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | || ||||| || ||||||||| | |||||| | |||| | |||||||||| Sbjct 41350 GCAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAA 41409 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||| | || ||||| | |||| ||||||| || Sbjct 41410 TATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTAT 41460 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603 |||| ||||||||| || || || ||||| || || ||||||||||| || |||| Sbjct 40765 TTGTAGAAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGT 40824 Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGC 28662 ||||| || || | | || | || || |||| || || || || ||| | | Sbjct 40825 CGAACCAAGCGATACCATCGAGAATGTAAAAGCCAAAATTCAA-GATAAGGAAGGAATTC 40883 Query 28663 CCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 28722 || |||||| || | || ||||| || || ||||||||||||||| | |||| | Sbjct 40884 CCCCAGATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTT 40943 Query 28723 CCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGA 28782 ||||||| || || ||||||||||| ||| | || ||||| | |||| ||||||| | Sbjct 40944 CCGATTACAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTA 41003 Query 28783 T 28783 | Sbjct 41004 T 41004 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| |||||||| ||||| |||| ||||| Sbjct 41459 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41518 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || || |||| || || || || ||| | ||| |||||| Sbjct 41519 GATACCATCGAGAACGTGAAAGCTAAAATTCAA-GATAAGGAAGGAATTCCCCCAGATCA 41577 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || ||||| || || |||||||| ||||| | |||| | | |||||||| Sbjct 41578 ACAACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAA 41637 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||||||||| || |||||| |||| || ||| | || || || Sbjct 41638 TATCCAAAAAGAATCCACACTGCACTTGGTGTTGAGACTTCGTGGTGG 41685 >seq4379 Length=409 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| |||||||| ||||| |||| ||||| Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || || ||||| ||| | ||| |||||| Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCCCCAGATCA 134 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | || ||||| || ||||||||| | |||||| | |||| | |||||||||| Sbjct 135 GCAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAA 194 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||| | || ||||| | |||| ||||||| || Sbjct 195 TATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTAT 245 >seq11483 Length=76730 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || |||||| | ||||||||||| |||||| |||| |||||||| Sbjct 50848 ATGCAGATTTTCGTGAAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAACCTTCC 50907 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || || || || || || || | || ||||| Sbjct 50908 GACTCGATTGAGAATGTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAG 50967 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | ||||| || || |||||||| |||||| | ||| || | || |||||| Sbjct 50968 CAGAGATTGATCTTCGCTGGAAAACAATTAGAAGATGGAAGAACCTTGTCGGACTATAAC 51027 Query 28734 ATTCAAAAAG 28743 |||||||||| Sbjct 51028 ATTCAAAAAG 51037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425337975419931