Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq12829 163 5e-35 seq5713 159 6e-34 seq4379 159 6e-34 seq11905 131 3e-25 seq11230 125 1e-23 seq9601 125 1e-23 seq9555 125 1e-23 seq11483 123 4e-23 >seq12829 Length=36573 Score = 163 bits (180), Expect = 5e-35 Identities = 146/183 (80%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| || ||||| || | ||| |||| ||||||||||||||||| || | Sbjct 35476 AATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAATCAAACG 35417 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| ||||| || |||||||||||||| ||||| ||| | |||| || | Sbjct 35416 CTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTTCTATTGA 35357 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||||| | |||||| |||||||| || |||||||||||||| ||||| Sbjct 35356 ATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAAAGATTTG 35297 Query 193358 CAT 193360 ||| Sbjct 35296 CAT 35294 >seq5713 Length=114977 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||||||||| ||||||| ||| || || | ||||| ||||||| Sbjct 41466 ATTTGCATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTA 41407 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | ||||| ||| |||| |||||| ||||| || || | | || ||| Sbjct 41406 TAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGA 41347 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||| | ||| | ||| || |||||| Sbjct 41346 TCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTG 41287 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || ||||||||||| |||| ||||| || || |||||||| Sbjct 41286 GGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||||||||||||||||| ||| || || | || || |||||| Sbjct 41238 ATTTGCATACCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTA 41179 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | ||||| ||| |||| |||||| ||||| || || | | || ||| Sbjct 41178 TAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGA 41119 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||| ||||||||||| ||||||| ||| | ||| ||| |||||| Sbjct 41118 TCTGGGGGAATTCCCTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTG 41059 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || ||||||||||| || | ||||| || || || ||||| Sbjct 41058 GGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||||||| ||||||| ||| || || | ||||| ||||| || ||| Sbjct 41004 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCG 40945 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || |||||||| || || || || | | || ||||| || Sbjct 40944 GAAAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGG 40885 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||||| ||||| ||| || |||||| | || Sbjct 40884 GGAATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCG 40825 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || |||||||| || | ||||| || || || |||||||| Sbjct 40824 ACTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| |||| ||| | ||||| |||||||| || || | ||||| || ||| Sbjct 41667 ACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTCTTCT 41608 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||||||| || || || || | | |||||||| || || |||||||| |||||||| Sbjct 41607 AATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGA 41548 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | || || |||||| | || ||||| || || ||||||||| Sbjct 41547 ATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTA 41488 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||||| || || |||||||| Sbjct 41487 CCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||||||||| ||||||| ||| || || | ||||| ||||||| Sbjct 251 ATTTGCATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTA 192 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | ||||| ||| |||| |||||| ||||| || || | | || ||| Sbjct 191 TAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGA 132 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||| | ||| | ||| || |||||| Sbjct 131 TCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTG 72 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || ||||||||||| |||| ||||| || || |||||||| Sbjct 71 GGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || |||||||| || || || || | | || ||||| || || ||| Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 ||||| |||||||| ||||||| ||||| ||| || |||||| | || ||||| Sbjct 347 CCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCG 288 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||||||| |||| ||||| || || |||||||| Sbjct 287 AGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq11905 Length=336 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | |||| ||| | || | ||||| || || Sbjct 77 AATTTGCATACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTT 136 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| |||||||| || || | ||| |||||||| || || ||||| ||||| Sbjct 137 GTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTG 196 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| ||||| ||||| | ||| | ||| || || ||||| Sbjct 197 GTCGGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGA 256 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| |||||| ||||| || || || ||||| || || |||||||| Sbjct 257 CGGCTCAACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq11230 Length=416 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | |||| ||| | || | ||||| |||||| Sbjct 321 AATTTGCATACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATT 262 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||||||| ||| || || ||||||||||| || || ||||| ||||| Sbjct 261 GTAGTCACTCAACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTG 202 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| ||||| || || | || | ||| || || ||||| Sbjct 201 GTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGA 142 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| | ||| || ||||| || || |||||||| || || |||||||| Sbjct 141 CGGCTCGACTTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| ||||| ||||| | ||| | ||| || || ||||| | |||||||||| Sbjct 416 CCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCT 357 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| ||||| || || || ||||| || || |||||||| Sbjct 356 AAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||| |||||||| || || | ||| |||||||| || || ||||| Sbjct 90 ATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTT 149 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| ||||| ||||| | ||| | ||| || || Sbjct 150 TGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTG 209 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | ||||||||||| |||||| ||||| || || || ||||| || || |||||| Sbjct 210 TCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGC 269 Query 193359 AT 193360 || Sbjct 270 AT 271 >seq9555 Length=64705 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||| |||||||| || || | ||| |||||||| || || ||||| Sbjct 30718 ATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTT 30659 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| ||||| ||||| | ||| | ||| || || Sbjct 30658 TGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTG 30599 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | ||||||||||| |||||| ||||| || || || ||||| || || |||||| Sbjct 30598 TCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGC 30539 Query 193359 AT 193360 || Sbjct 30538 AT 30537 Score = 113 bits (124), Expect = 8e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 |||||||| ||| || || ||||||||||| || || ||||| ||||| || || || Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||| ||||| || || | || | ||| || || ||||| | ||| ||| Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 30812 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || ||||| || || |||||||| || || |||||||| Sbjct 30811 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||| |||||||| || || | |||||||||||| || || ||||| Sbjct 30135 ATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTT 30076 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| ||||| || || | || | ||| || || Sbjct 30075 TGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTG 30016 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| ||||| | ||| || ||||| || || || ||||| || || |||||| Sbjct 30015 TCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGC 29956 Query 193359 AT 193360 || Sbjct 29955 AT 29954 Score = 102 bits (112), Expect = 1e-16 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||| |||||||| || || | |||||||||||| || || ||||| Sbjct 29907 ATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTT 29848 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| ||||| || || | || | ||| || || Sbjct 29847 TGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTG 29788 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| ||||| | ||| || ||||| || || || ||||| || || || ||| Sbjct 29787 TCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGC 29728 Query 193359 AT-TTTAT 193365 || ||||| Sbjct 29727 ATGTTTAT 29720 >seq11483 Length=76730 Score = 123 bits (136), Expect = 4e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| || || ||||| ||| |||||||||||||| || || || ||||| Sbjct 51030 AATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGATCAATCT 50971 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || || ||||| ||||| || || || ||| | ||| ||| | Sbjct 50970 CTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCTCAATCGA 50911 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||||| || ||||| || || || |||||||| || || ||||| || || || || Sbjct 50910 GTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGAAAATCTG 50851 Query 193358 CAT 193360 ||| Sbjct 50850 CAT 50848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899509454430480