Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12829 145 1e-29 seq5713 127 3e-24 seq4379 127 3e-24 seq11905 118 2e-21 seq11230 118 2e-21 seq5251 118 2e-21 seq9601 114 2e-20 seq9555 114 2e-20 >seq12829 Length=36573 Score = 145 bits (160), Expect = 1e-29 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 155801 TAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTAT 155860 |||| || | |||| | | | |||||||| ||| | ||||| | || || ||||| || Sbjct 35274 TAATCAATACTTATTT--TCAGATGCAAATCTTTGTAAAAACGCTCACCGGTAAAACAAT 35331 Query 155861 TACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAA 155920 || || ||||| ||| ||||||| || ||| |||||| | ||||| |||||||| Sbjct 35332 AACTTTGGAAGTTGAACCTTCTGATTCAATAGAAAATGTGAAACAGAAAATTCAAGATAA 35391 Query 155921 AGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATAC 155980 |||||| || |||||||| ||||| | ||||||| |||||| || ||||| || ||| Sbjct 35392 AGAAGGGATTCCTCCAGATCAACAGCGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGG 35451 Query 155981 CAGAACTTTATCAGATTATAATAT 156004 | |||||||||||||||||||| Sbjct 35452 GCGTACTTTATCAGATTATAATAT 35475 >seq5713 Length=114977 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| ||||| ||||||||||| | ||||||||| Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || |||||| |||||| |||||||||||||| || || ||||| || Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 41350 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||||| || || || |||||| |||||| | || ||||||||| Sbjct 41351 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41410 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| | ||||| || | |||| ||||| ||| Sbjct 41411 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGT 41458 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| |||||||| ||||||||||| | ||||||||| Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| ||||||||||| || || || ||||| || Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAG 41122 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||||| || || || |||||| |||||| | || ||||||| Sbjct 41123 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATA-- 41180 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || |||| | ||||| || | |||| ||||| ||| Sbjct 41181 ATATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGGT 41230 Score = 120 bits (132), Expect = 4e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| ||||| ||||||||||| | ||||||||| Sbjct 41459 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41518 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||||||| |||||| |||||||| ||||| || || ||||| ||| Sbjct 41519 GATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAA 41578 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | || ||||| || | ||||| |||||| | || ||||||||| Sbjct 41579 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAAT 41638 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || ||||| | || || || || ||||| ||| Sbjct 41639 ATCCAAAAAGAATCCACACTGCACTTGGTGTTGAGA 41674 >seq4379 Length=409 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| ||||| ||||||||||| | ||||||||| Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || |||||| |||||| |||||||||||||| || || ||||| || Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 135 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||||| || || || |||||| |||||| | || ||||||||| Sbjct 136 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 195 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| | ||||| || | |||| ||||| ||| Sbjct 196 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGT 243 >seq11905 Length=336 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || || |||||||| || || Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| ||| |||||| ||||| |||||||| || || || || ||| Sbjct 253 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAA 194 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 193 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 134 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || |||||||| |||||| Sbjct 133 ATCCAAAAAGAATCCACCCTTCATTTGGTGTTA 101 >seq11230 Length=416 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || || || |||||||| || Sbjct 85 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 144 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || ||| || ||||| ||||||||||| || || || ||| Sbjct 145 GACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAA 204 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| || ||| | |||||| |||||| || || || ||| Sbjct 205 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAAT 264 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || |||||||| |||||| Sbjct 265 ATTCAGAAAGAATCCACCCTTCATTTGGTGTTA 297 >seq5251 Length=56147 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 |||||||| ||||| ||||||||||| || ||||| |||||||||| ||||||||| || Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCT 18301 ||||||||||| | || ||||||| ||||| || ||||| ||||| || || || Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 18302 ATTAATCTTTCAGCAAAA 18319 | | |||||| ||||| Sbjct 14672 ACGATTCTTTCGCCAAAA 14689 >seq9601 Length=294 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || || |||||||| || || Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| ||| |||||| ||||| |||||||| || || || || ||| Sbjct 211 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAA 152 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 151 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 92 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||| ||||| ||| Sbjct 91 ATCCAAAAAGAATCCACCCTTCACTTAGTATTA 59 >seq9555 Length=64705 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || || |||||||| || || Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| ||| |||||| ||||| |||||||| || || || || ||| Sbjct 30597 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAA 30656 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 30657 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 30716 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||| ||||| ||| Sbjct 30717 ATCCAAAAAGAATCCACCCTTCACTTAGTATTA 30749 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || || || |||||||| || Sbjct 30765 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 30824 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || ||| || ||||| ||||||||||| || || || ||| Sbjct 30825 GACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAA 30884 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 ||||||||||| | ||||| || ||| | |||||| |||||| || Sbjct 30885 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTT 30931 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || || || |||||||| || Sbjct 29954 ATGCAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCG 30013 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || ||| || ||||| |||||||| || || || || ||| Sbjct 30014 GACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 30073 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| || || |||||||| ||||| || || || || Sbjct 30074 CAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 30133 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||| ||||| ||| Sbjct 30134 ATCCAAAAAGAATCCACCCTTCACTTAGTATTA 30166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 155818 ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 ||||| ||||| || || | ||||| | || |||||||| || || || |||||||| Sbjct 29720 ATAAACATGCAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAG 29779 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 || || | || |||||| || ||| || ||||| |||||||| || || || Sbjct 29780 CCGTCGGACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCC 29839 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||||||||||| | ||||| || || |||||||| ||||| || || Sbjct 29840 GACCAACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGAC 29899 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || || ||||| | || ||||| ||||| ||| Sbjct 29900 TACAACATCCAAAAAGAATCCACCCTTCACTTAGTATTA 29938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731754086272400